YRC Public Data Repository - Protein Structure Prediction

Protein:	YHCF_ECOLI
Organism:	Escherichia coli
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHCF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67099955, gi\|... - gi\|67666454\|ref\|ZP_00463701.1\| putative outer membrane protein [Burkholderia cenocepacia HI2424], gi...	203.0	[0..1]	[238..6]
gi\|67655785, gi\|... - gi\|67655785\|ref\|ZP_00453170.1\| putative outer membrane protein [Burkholderia cenocepacia AU 1054], g...	199.0	[0..1]	[238..6]
gi\|72610154, gi\|... - gi\|74016683\|ref\|ZP_00687308.1\| putative outer membrane protein [Burkholderia ambifaria AMMD], gi\|726...	196.0	[0..1]	[238..6]
gi\|170082748, gi... - gi\|170082748\|ref\|YP_001732068.1\| periplasmic protein [Escherichia coli str. K-12 substr. DH10B], gi\|... GLTF_ECOLI - Protein gltF precursor - Escherichia coli gi\|89109977, gi\|... - gi\|89109977\|ref\|AP_003757.1\| periplasmic protein [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|238902316, gi... - gi\|238902316\|ref\|YP_002928112.1\| periplasmic protein [Escherichia coli BW2952], gi\|238862005\|gb\|ACR6... EG11514 - periplasmic protein / Periplasmic protein, function unknown EG11514 - periplasmic protein / Periplasmic protein, function unknown	194.0	[0..3]	[238..8]
gi\|238719957, gi... - gi\|77963553\|ref\|ZP_00827362.1\| hypothetical protein YmolA_01000239 [Yersinia mollaretii ATCC 43969],...	189.0	[0..1]	[237..1]
gi\|199606258, gi... - gi\|200389160\|ref\|ZP_03215772.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|16423140, gi\|... - gi\|16767815\|ref\|NP_463430.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164231... gi\|194406954, gi... - gi\|194448650\|ref\|YP_002048594.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|197262742, gi... - gi\|197262742\|ref\|ZP_03162816.1\| putative outer membrane protein [Salmonella enterica subsp. enterica... gi\|195632735, gi... - gi\|195632735\|gb\|EDX51189.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... gi\|194445908, gi... - gi\|194445908\|ref\|YP_002043815.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|205331427, gi... - gi\|205331427\|gb\|EDZ18191.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... gi\|168244527, gi... - gi\|205336637\|gb\|EDZ23401.1\| putative outer membrane protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=STM14_5494] [protein=putative outer membrane protein] [protein_id=YP_005240918.1] [location=co...	185.0	[0..1]	[238..1]
gi\|84358649 - gi\|84358649\|ref\|ZP_00983421.1\| hypothetical protein BdolA_01004868 [Burkholderia dolosa AUO158]	182.0	[0..10]	[238..1]
gi\|217423228, gi... - gi\|217423228\|ref\|ZP_03454730.1\| conserved hypothetical protein [Burkholderia pseudomallei 576], gi\|2... gi\|254265116, gi... - gi\|254265116\|ref\|ZP_04955981.1\| conserved hypothetical protein [Burkholderia pseudomallei 1710a], gi... gi\|242311497, gi... - gi\|242311497\|ref\|ZP_04810514.1\| conserved hypothetical protein [Burkholderia pseudomallei 1106b], gi... gi\|126232052, gi... - gi\|126458284\|ref\|YP_001074210.1\| hypothetical protein BURPS1106A_A0167 [Burkholderia pseudomallei 11... gi\|76817479, gi\|... - gi\|76817479\|ref\|YP_336790.1\| hypothetical protein BURPS1710b_A1633 [Burkholderia pseudomallei 1710b]...	178.0	[0..2]	[237..5]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVKLLIAG SAFFAMSAQA ADRVSIDVKV TLEAAACTPI LSNGGVVNFG SHSVNRLSTQ  60
   61 HYTQIGTRNI NMTITCESAT GIAITARDTR MDSMTTGKDS GGQSGVKYTL NGGGYISQTT 120
  121 RLFGLGKTKD NKNIGSYAVL IDSNNISASN GSQTLAVSIA GADAVITGQK RAWQTLTAYP 180
  181 LAVDQSYYYT FVKPGETTPT PVTNAIIPLQ VSASIANDLG GSEKIELDGK AVISVVYL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.75
Match:	2j2zB
Description:	No description for 2j2zB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits