YRC Public Data Repository - Protein Structure Prediction

Protein:	YHCC_ECOLI
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHCC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187731284, gi... - gi\|75176097\|ref\|ZP_00696265.1\| COG1242: Predicted Fe-S oxidoreductase [Shigella boydii BS512], gi\|18...	256.0	[0..1]	[309..1]
gi\|74313748, gi\|... - gi\|74313748\|ref\|YP_312167.1\| hypothetical protein SSON_3359 [Shigella sonnei Ss046], gi\|73857225\|gb\|...	254.0	[0..1]	[309..1]
gi\|606150\|gb\|AAA... - ORF_f309 [Escherichia coli] gi\|606150 - gi\|606150\|gb\|AAA58013.1\| ORF_f309 [Escherichia coli]	254.0	[0..1]	[309..1]
gi\|170520839, gi... - gi\|170683121\|ref\|YP_001745483.1\| radical SAM family protein [Escherichia coli SMS-3-5], gi\|170520839... gi\|215266599, gi... - gi\|215488527\|ref\|YP_002330958.1\| predicted Fe-S oxidoreductase [Escherichia coli O127:H6 str. E2348/... gi\|218367050, gi... - gi\|218560281\|ref\|YP_002393194.1\| putative Fe-S oxidoreductase [Escherichia coli S88], gi\|218367050\|e... gi\|237706037, gi... - gi\|237706037\|ref\|ZP_04536518.1\| radical SAM protein [Escherichia sp. 3_2_53FAA], gi\|226899077\|gb\|EEH... gi\|115514627, gi... - gi\|117625503\|ref\|YP_858826.1\| putative Fe-S oxidoreductase [Escherichia coli APEC O1], gi\|115514627\|...	254.0	[0..1]	[307..1]
gi\|110643452, gi... - gi\|110643452\|ref\|YP_671182.1\| hypothetical protein ECP_3299 [Escherichia coli 536], gi\|110345044\|gb\|... gi\|227835328, gi... - gi\|227887932\|ref\|ZP_04005737.1\| radical SAM protein [Escherichia coli 83972], gi\|227835328\|gb\|EEJ457... gi\|191174418, gi... - gi\|75236486\|ref\|ZP_00720581.1\| COG1242: Predicted Fe-S oxidoreductase [Escherichia coli F11], gi\|191...	253.0	[0..1]	[307..1]
gi\|30042807, gi\|... - gi\|30064548\|ref\|NP_838719.1\| hypothetical protein S3469 [Shigella flexneri 2a str. 2457T], gi\|300428... gi\|56383839, gi\|... - gi\|56480288\|ref\|NP_709009.2\| hypothetical protein SF3251 [Shigella flexneri 2a str. 301], gi\|5638383...	253.0	[0..1]	[309..1]
gi\|46912171, gi\|... - gi\|54307748\|ref\|YP_128768.1\| putative Fe-S oxidoreductase [Photobacterium profundum SS9], gi\|4691217...	251.0	[0..1]	[301..1]
gi\|75256587, gi\|... - gi\|75256587\|ref\|ZP_00728217.1\| COG1242: Predicted Fe-S oxidoreductase [Escherichia coli E22], gi\|193... gi\|191168627, gi... - gi\|75228172\|ref\|ZP_00714837.1\| COG1242: Predicted Fe-S oxidoreductase [Escherichia coli B7A], gi\|191... gi\|75209654, gi\|... - gi\|75209654\|ref\|ZP_00709866.1\| COG1242: Predicted Fe-S oxidoreductase [Escherichia coli B171], gi\|19... gi\|218696916, gi... - gi\|218696916\|ref\|YP_002404583.1\| putative Fe-S oxidoreductase [Escherichia coli 55989], gi\|218353648... gi\|218555781, gi... - gi\|218555781\|ref\|YP_002388694.1\| putative Fe-S oxidoreductase [Escherichia coli IAI1], gi\|218362549\|...	251.0	[0..1]	[309..1]
gi\|90325845, gi\|... - gi\|90413154\|ref\|ZP_01221150.1\| putative Fe-S oxidoreductase [Photobacterium profundum 3TCK], gi\|9032...	250.0	[0..1]	[301..1]
gi\|81242673, gi\|... - gi\|82778525\|ref\|YP_404874.1\| hypothetical protein SDY_3392 [Shigella dysenteriae Sd197], gi\|81242673...	248.0	[0..1]	[309..1]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLQKLVNMF GGDLTRRYGQ KVHKLTLHGG FSCPNRDGTI GRGGCTFCNV ASFADEAQQH  60
   61 RSIAEQLAHQ ANLVNRAKRY LAYFQAYTST FAEVQVLRSM YQQAVSQANI VGLCVGTRPD 120
  121 CVPDAVLDLL CEYKDQGYEV WLELGLQTAH DKTLHRINRG HDFACYQRTT QLARQRGLKV 180
  181 CSHLIVGLPG EGQAECLQTL ERVVETGVDG IKLHPLHIVK GSIMAKAWEA GRLNGIELED 240
  241 YTLTAGEMIR HTPPEVIYHR ISASARRPTL LAPLWCENRW TGMVELDRYL NEHGVQGSAL 300
  301 GRPWLPPTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2qgqA
Description:	No description for 2qgqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits