YRC Public Data Repository - Protein Structure Prediction

Protein:	YHCA_ECOLI
Organism:	Escherichia coli
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHCA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238799305, gi... - gi\|77960106\|ref\|ZP_00823998.1\| COG3121: P pilus assembly protein, chaperone PapD [Yersinia mollareti...	217.0	[0..2]	[223..6]
EG12774 - putative periplasmic pilin chaperone / Predicted periplasmic pilus chaperone, function unknown gi\|238862814, gi... - gi\|238902247\|ref\|YP_002928043.1\| putative periplasmic pilin chaperone [Escherichia coli BW2952], gi\|... gi\|170082680, gi... - gi\|170082680\|ref\|YP_001732000.1\| periplasmic pilin chaperone [Escherichia coli str. K-12 substr. DH1... gi\|89109908, gi\|... - gi\|89109908\|ref\|AP_003688.1\| predicted periplasmic pilin chaperone [Escherichia coli str. K-12 subst... EG12774 - putative periplasmic pilin chaperone / Predicted periplasmic pilus chaperone, function unknown YRAI_ECOLI - Hypothetical fimbrial chaperone yraI precursor - Escherichia coli	214.0	[0..1]	[224..1]
gi\|110807011, gi... - gi\|110807011\|ref\|YP_690531.1\| putative chaperone [Shigella flexneri 5 str. 8401], gi\|110616559\|gb\|AB...	213.0	[0..1]	[224..1]
gi\|13363494, gi\|... - gi\|15833275\|ref\|NP_312048.1\| putative chaperone [Escherichia coli O157:H7 str. Sakai], gi\|13363494\|d... gi\|217319538, gi... - gi\|217327171\|ref\|ZP_03443254.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|208741179, gi... - gi\|208821056\|ref\|ZP_03261376.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|208735393, gi... - gi\|208814116\|ref\|ZP_03255445.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|254594493, gi... - gi\|254795093\|ref\|YP_003079930.1\| predicted periplasmic pilin chaperone [Escherichia coli O157:H7 str... gi\|188024826, gi... - gi\|188024826\|ref\|ZP_02997254.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|187775803, gi... - gi\|187775803\|ref\|ZP_02992720.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|13363494, gi\|... - gi\|15833275\|ref\|NP_312048.1\| putative chaperone [Escherichia coli O157:H7], gi\|13363494\|dbj\|BAB37444... gi\|189358729, gi... - gi\|189358729\|gb\|EDU77148.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157:H7 ... gi\|25299311, gi\|... - pir\|\|H85976 probable chaperone yraI [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|189405537, gi... - gi\|189405537\|ref\|ZP_03007847.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|15803682, gi\|... - gi\|15803682\|ref\|NP_289716.1\| putative chaperone [Escherichia coli O157:H7 EDL933], gi\|12517745\|gb\|AA... gi\|189367530, gi... - gi\|189404075\|ref\|ZP_03007321.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|189361497, gi... - gi\|189403309\|ref\|ZP_03007036.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|189010330, gi... - gi\|189010330\|ref\|ZP_03006286.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157...	212.0	[0..1]	[224..1]
gi\|27808147 - gi\|27808147\|dbj\|BAC55513.1\| fimbrial chaperon protein [Edwardsiella tarda]	211.0	[0..2]	[223..1]
gi\|24053610, gi\|... - gi\|24114432\|ref\|NP_708942.1\| putative chaperone [Shigella flexneri 2a str. 301], gi\|24053610\|gb\|AAN4... gi\|30042741, gi\|... - gi\|30064482\|ref\|NP_838653.1\| putative chaperone [Shigella flexneri 2a str. 2457T], gi\|30042741\|gb\|AA...	210.0	[0..1]	[224..1]
gi\|113530526, gi... - gi\|116696027\|ref\|YP_841603.1\| fimbrial assembly chaperone [Ralstonia eutropha H16], gi\|113530526\|emb...	208.0	[0..7]	[216..13]
gi\|75260073 - gi\|75260073\|ref\|ZP_00731351.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75239292 - gi\|75239292\|ref\|ZP_00723263.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75211094 - gi\|75211094\|ref\|ZP_00711207.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B... gi\|75187951 - gi\|75187951\|ref\|ZP_00701218.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E...	206.0	[0..9]	[224..1]
gi\|75227528 - gi\|75227528\|ref\|ZP_00714287.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B...	206.0	[0..9]	[224..1]
gi\|1232059 - gi\|1232059\|gb\|AAA92619.1\| chaperone	205.0	[0..2]	[221..1]

Back

Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRHITFTVF ITTSMNTLAT GMVPETSVLL VDEKRGEASI NIKNTDDHPS LLYTTIVDLP  60
   61 ESNKSIRLIP TQPVIRVEAG QVQQVRFLLQ ATVPLQSEEL KRVTFEGIPP KDDKSSRVTV 120
  121 SIRQDLPVLI HPASLPEERE TWKFLEWRKN GDQIEISNPS NYVVRMTLQF KTLPSGKTGA 180
  181 INKTYFLPHT STTTALTNAT DTKVEFYPAS RYGYRGNKYV TDLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2co6B
Description:	No description for 2co6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits