YRC Public Data Repository - Protein Structure Prediction

Protein:	YHBU_ECOLI
Organism:	Escherichia coli
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHBU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90407723, gi\|... - gi\|90407723\|ref\|ZP_01215902.1\| putative protease [Psychromonas sp. CNPT3], gi\|90311192\|gb\|EAS39298.1...	419.0	[0..2]	[325..4]
gi\|106883214, gi... - gi\|119945849\|ref\|YP_943529.1\| peptidase U32 [Psychromonas ingrahamii 37], gi\|119864453\|gb\|ABM03930.1...	419.0	[0..2]	[325..4]
gi\|150390235, gi... - gi\|77683677\|ref\|ZP_00799122.1\| Peptidase U32 [Alkaliphilus metalliredigenes QYMF], gi\|77640465\|gb\|EA...	417.0	[0..1]	[331..4]
gi\|25320721 - pir\|\|B97108 collagenase family protease [imported] - Clostridium acetobutylicum gi\|15024650, gi\|... - gi\|15894964\|ref\|NP_348313.1\| collagenase family protease [Clostridium acetobutylicum ATCC 824], gi\|1...	416.0	[0..2]	[327..5]
gi\|196196708, gi... - gi\|196253880\|ref\|ZP_03152484.1\| peptidase U32 [Clostridium thermocellum DSM 4150], gi\|196196708\|gb\|E... gi\|67849013, gi\|... - gi\|67917028\|ref\|ZP_00510707.1\| Peptidase U32 [Clostridium thermocellum ATCC 27405], gi\|67849013\|gb\|E...	416.0	[0..1]	[329..4]
gi\|26110166, gi\|... - gi\|26249738\|ref\|NP_755778.1\| putative protease yhbU precursor [Escherichia coli CFT073], gi\|26110166...	415.0	[0..1]	[331..10]
gi\|71281078, gi\|... - gi\|71281078\|ref\|YP_268857.1\| U32 family peptidase [Colwellia psychrerythraea 34H], gi\|71146818\|gb\|AA...	415.0	[0..1]	[331..1]
gi\|167911781 - gi\|167911781\|ref\|ZP_02498872.1\| peptidase, U32 family protein [Burkholderia pseudomallei 112] gi\|67737013, gi\|... - gi\|67737013\|ref\|ZP_00487821.1\| COG0826: Collagenase and related proteases [Burkholderia pseudomallei... gi\|254191322, gi... - gi\|67753703\|ref\|ZP_00492630.1\| COG0826: Collagenase and related proteases [Burkholderia pseudomallei...	415.0	[0..1]	[331..14]
gi\|59479201, gi\|... - gi\|59711100\|ref\|YP_203876.1\| collagenase-like protease YhbU [Vibrio fischeri ES114], gi\|59479201\|gb\|... gi\|197315760, gi... - gi\|197334270\|ref\|YP_002155248.1\| STM-proteaseA [Vibrio fischeri MJ11], gi\|197315760\|gb\|ACH65207.1\| S...	414.0	[0..1]	[331..1]
gi\|237706089, gi... - gi\|237706089\|ref\|ZP_04536570.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91074150, gi\|... - gi\|91212576\|ref\|YP_542562.1\| putative protease YhbU precursor [Escherichia coli UTI89], gi\|91074150\|...	414.0	[0..1]	[331..10]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLCPAGNL PALKAAIENG ADAVYIGLKD DTNARHFAGL NFTEKKLQEA VSFVHQHRRK  60
   61 LHIAINTFAH PDGYARWQRA VDMAAQLGAD ALILADLAML EYAAERYPHI ERHVSVQASA 120
  121 TNEEAINFYH RHFDVARVVL PRVLSIHQVK QLARVTPVPL EVFAFGSLCI MSEGRCYLSS 180
  181 YLTGESPNTI GACSPARFVR WQQTPQGLES RLNEVLIDRY QDGENAGYPT LCKGRYLVDG 240
  241 ERYHALEEPT SLNTLELLPE LMAANIASVK IEGR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.88
Match:	1u83A
Description:	PSL synthase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [275-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRSPAYVSQV AKVWRQAIDR CKADPQNFVP QSAWMETLGS MSEGTQTTLG AYHRKWQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits