YRC Public Data Repository - Protein Structure Prediction

Protein:	YHBN_ECOLI
Organism:	Escherichia coli
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHBN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26249786, gi\|... - gi\|26249786\|ref\|NP_755826.1\| hypothetical protein c3960 [Escherichia coli CFT073], gi\|26110214\|gb\|AA... gi\|110807066, gi... - gi\|110807066\|ref\|YP_690586.1\| hypothetical protein SFV_3230 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24053674, gi\|... - ref\|NP_708999.1\| hypothetical protein SF3240 [Shigella flexneri 2a str. 301], gb\|AAN44706.1\| orf, c... gi\|91212625, gi\|... - gi\|91212625\|ref\|YP_542611.1\| hypothetical protein UTI89_C3636 [Escherichia coli UTI89], gi\|91074199\|...	195.0	[0..1]	[185..8]
gi\|62181826, gi\|... - gi\|62181826\|ref\|YP_218243.1\| hypothetical protein SC3256 [Salmonella enterica subsp. enterica serova...	192.0	[0..1]	[185..8]
gi\|194403094, gi... - gi\|194444431\|ref\|YP_002042576.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|194409253, gi... - gi\|194450949\|ref\|YP_002047347.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|168463456, gi... - gi\|195633360\|gb\|EDX51774.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205343318, gi... - gi\|205343318\|gb\|EDZ30082.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205337868, gi... - gi\|205337868\|gb\|EDZ24632.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205348536, gi... - gi\|205348536\|gb\|EDZ35167.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|205333933, gi... - gi\|205333933\|gb\|EDZ20697.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|197289161, gi... - gi\|197289161\|gb\|EDY28530.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|167552032, gi... - gi\|205323170\|gb\|EDZ11009.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|167994511, gi... - gi\|205327638\|gb\|EDZ14402.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-bindi... gi\|213648389 - gi\|213648389\|ref\|ZP_03378442.1\| hypothetical protein SentesTy_14559 [Salmonella enterica subsp. ente... gi\|213855448 - gi\|213855448\|ref\|ZP_03383688.1\| hypothetical protein SentesT_15920 [Salmonella enterica subsp. enter... gi\|213426639 - gi\|213426639\|ref\|ZP_03359389.1\| hypothetical protein SentesTyphi_14118 [Salmonella enterica subsp. e... gi\|213622832 - gi\|213622832\|ref\|ZP_03375615.1\| hypothetical protein SentesTyp_37147 [Salmonella enterica subsp. ent... gi\|213053147 - gi\|213053147\|ref\|ZP_03346025.1\| hypothetical protein Salmoneentericaenterica_09610 [Salmonella enter... gi\|213419715 - gi\|213419715\|ref\|ZP_03352781.1\| hypothetical protein Salmonentericaenterica_18743 [Salmonella enteri... gi\|207858566, gi... - gi\|207858566\|ref\|YP_002245217.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|213021918 - gi\|213021918\|ref\|ZP_03336365.1\| hypothetical protein Salmonelentericaenterica_04022 [Salmonella ente... gi\|204319921, gi... - gi\|204931154\|ref\|ZP_03221948.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|205354219, gi... - gi\|205354219\|ref\|YP_002228020.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella e... gi\|198242711, gi... - gi\|198242711\|ref\|YP_002217289.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|200388115, gi... - gi\|200388115\|ref\|ZP_03214727.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|197248482, gi... - gi\|197248482\|ref\|YP_002148243.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... gi\|197262981, gi... - gi\|197262981\|ref\|ZP_03163055.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|194468742, gi... - gi\|194468742\|ref\|ZP_03074726.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-b... gi\|194737776, gi... - gi\|194737776\|ref\|YP_002116268.1\| lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-... lcl\|NC_016856.1_... - [gene=yhbN] [protein=hypothetical protein] [protein_id=YP_005239498.1] [location=3496972..3497526] gi\|214000953 - gi\|214000953\|ref\|ZP_03411688.1\| hypothetical protein Salmonellentericaenterica_10471 [Salmonella ent... gi\|16766613, gi\|... - gi\|16766613\|ref\|NP_462228.1\| hypothetical protein STM3318 [Salmonella typhimurium LT2], gi\|16421875\|...	190.0	[0..1]	[185..1]
gi\|16762080 - gi\|16762080\|ref\|NP_457697.1\| hypothetical protein STY3497 [Salmonella enterica subsp. enterica serov... gi\|56415247, gi\|... - gi\|56415247\|ref\|YP_152322.1\| lipopolysaccharide transport periplasmic protein LptA [Salmonella enter... gi\|25352006, gi\|... - gi\|25352006\|pir\|\|AE0905 conserved hypothetical protein STY3497 [imported] - Salmonella enterica subs... gi\|29143569, gi\|... - gi\|29143569\|ref\|NP_806911.1\| hypothetical protein t3235 [Salmonella enterica subsp. enterica serovar... gi\|224585115, gi... - gi\|224585115\|ref\|YP_002638914.1\| hypothetical protein SPC_3388 [Salmonella enterica subsp. enterica ... gi\|161365692, gi... - gi\|161616328\|ref\|YP_001590293.1\| hypothetical protein SPAB_04136 [Salmonella enterica subsp. enteric...	175.0	[0..13]	[185..1]
gi\|77978704 - gi\|77978704\|ref\|ZP_00834129.1\| COG1934: Uncharacterized protein conserved in bacteria [Yersinia inte...	171.0	[0..1]	[183..1]
gi\|50119250, gi\|... - gi\|50119250\|ref\|YP_048417.1\| hypothetical protein ECA0290 [Pectobacterium atrosepticum SCRI1043], gi...	171.0	[0..1]	[183..1]
gi\|59710996, gi\|... - gi\|59710996\|ref\|YP_203772.1\| ABC transporter periplasmic-binding protein [Vibrio fischeri ES114], gi...	164.0	[0..8]	[172..1]
gi\|90413001, gi\|... - gi\|90413001\|ref\|ZP_01220999.1\| hypothetical protein yhbN precursor [Photobacterium profundum 3TCK], ...	162.0	[0..8]	[174..1]
gi\|46914782, gi\|... - gi\|54310341\|ref\|YP_131361.1\| hypotetical protein yhbN precursor [Photobacterium profundum SS9], gi\|4...	160.0	[0..8]	[172..1]
gi\|113461318, gi... - gi\|23466894\|ref\|ZP_00122480.1\| COG1934: Uncharacterized protein conserved in bacteria [Haemophilus s...	159.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKTNKLSL NLVLASSLLA ASIPAFAVTG DTDQPIHIES DQQSLDMQGN VVTFTGNVIV  60
   61 TQGTIKINAD KVVVTRPGGE QGKEVIDGYG KPATFYQMQD NGKPVEGHAS QMHYELAKDF 120
  121 VVLTGNAYLQ QVDSNIKGDK ITYLVKEQKM QAFSDKGKRV TTVLVPSQLQ DKNNKGQTPA 180
  181 QKKGN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.79588
Match:	PF03968.5
Description:	No description for PF03968.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits