YRC Public Data Repository - Protein Structure Prediction

Protein:	YGIW_ECOLI
Organism:	Escherichia coli
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGIW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|237706226, gi... - gi\|237706226\|ref\|ZP_04536707.1\| ygiW [Escherichia sp. 3_2_53FAA], gi\|226899266\|gb\|EEH85525.1\| ygiW [... gi\|254038193, gi... - gi\|254038193\|ref\|ZP_04872251.1\| ygiW [Escherichia sp. 1_1_43], gi\|226839817\|gb\|EEH71838.1\| ygiW [Esc... gi\|91212441, gi\|... - gi\|91212441\|ref\|YP_542427.1\| hypothetical protein UTI89_C3449 [Escherichia coli UTI89], gi\|91074015\|...	197.0	[0..1]	[130..20]
gi\|26249594, gi\|... - gi\|26249594\|ref\|NP_755634.1\| hypothetical protein c3763 [Escherichia coli CFT073], gi\|26110002\|gb\|AA...	196.0	[0..1]	[130..20]
gi\|25325125, gi\|... - gi\|25325125\|pir\|\|AH0888 probable exported protein [imported] - Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=ygiW] [protein=putative outer membrane protein] [protein_id=YP_005239347.1] [location=compleme... gi\|161365529, gi... - gi\|161616165\|ref\|YP_001590129.1\| hypothetical protein SPAB_03967 [Salmonella enterica subsp. enteric... gi\|198245150, gi... - gi\|198245150\|ref\|YP_002217154.1\| hypothetical protein SeD_A3527 [Salmonella enterica subsp. enterica... gi\|199604028, gi... - gi\|200386930\|ref\|ZP_03213542.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|207858435, gi... - gi\|207858435\|ref\|YP_002245086.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|213027200 - gi\|213027200\|ref\|ZP_03341647.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|194459096, gi... - gi\|194472732\|ref\|ZP_03078716.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197212865, gi... - gi\|197249162\|ref\|YP_002148103.1\| hypothetical protein SeAg_B3357 [Salmonella enterica subsp. enteric... gi\|197261599, gi... - gi\|197261599\|ref\|ZP_03161673.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197364046, gi... - gi\|197364046\|ref\|YP_002143683.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|195633417, gi... - gi\|195633417\|gb\|EDX51831.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343328, gi... - gi\|205343328\|gb\|EDZ30092.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|62181690, gi\|... - gi\|62181690\|ref\|YP_218107.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|194442987, gi... - gi\|194442987\|ref\|YP_002042441.1\| hypothetical protein SNSL254_A3432 [Salmonella enterica subsp. ente... gi\|56129374, gi\|... - gi\|56415117\|ref\|YP_152192.1\| hypothetical protein SPA3045 [Salmonella enterica subsp. enterica serov... gi\|194449571, gi... - gi\|194449571\|ref\|YP_002047172.1\| hypothetical protein SeHA_C3426 [Salmonella enterica subsp. enteric... gi\|167990274, gi... - gi\|205331066\|gb\|EDZ17830.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205333825, gi... - gi\|205333825\|gb\|EDZ20589.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205337742, gi... - gi\|205337742\|gb\|EDZ24506.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205348601, gi... - gi\|205348601\|gb\|EDZ35232.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16761952 - gi\|16761952\|ref\|NP_457569.1\| hypothetical protein STY3353 [Salmonella enterica subsp. enterica serov... gi\|16421732, gi\|... - gi\|16766476\|ref\|NP_462091.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164217... gi\|29143439, gi\|... - gi\|29143439\|ref\|NP_806781.1\| hypothetical protein t3097 [Salmonella enterica subsp. enterica serovar... gi\|213973980 - gi\|213973980\|ref\|ZP_03401239.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|214001848 - gi\|214001848\|ref\|ZP_03412583.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|224584976, gi... - gi\|224584976\|ref\|YP_002638775.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|213052529 - gi\|213052529\|ref\|ZP_03345407.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213424349 - gi\|213424349\|ref\|ZP_03357173.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213581573 - gi\|213581573\|ref\|ZP_03363399.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213647442 - gi\|213647442\|ref\|ZP_03377495.1\| possible exported protein [Salmonella enterica subsp. enterica serov...	196.0	[0..1]	[130..1]
gi\|30042631, gi\|... - gi\|30064374\|ref\|NP_838545.1\| hypothetical protein S3269 [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|56480242, gi\|... - gi\|56480242\|ref\|NP_708836.2\| hypothetical protein SF3065 [Shigella flexneri 2a str. 301], gi\|5638379...	194.0	[0..1]	[130..1]
gi\|77974591, gi\|... - gi\|77974591\|ref\|ZP_00830130.1\| COG3111: Uncharacterized conserved protein [Yersinia frederiksenii AT...	173.0	[0..1]	[128..1]
gi\|229899187, gi... - gi\|229899187\|ref\|ZP_04514330.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229895687, gi... - gi\|229895687\|ref\|ZP_04510858.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970149... gi\|21958233, gi\|... - gi\|22125352\|ref\|NP_668775.1\| hypothetical protein y1455 [Yersinia pestis KIM], gi\|21958233\|gb\|AAM850... gi\|229694987, gi... - gi\|229838621\|ref\|ZP_04458780.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|25325127 - pir\|\|AB0368 probable exported protein YPO3027 [imported] - Yersinia pestis (strain CO92) gi\|51597063, gi\|... - gi\|51597063\|ref\|YP_071254.1\| hypothetical protein YPTB2745 [Yersinia pseudotuberculosis IP 32953], g... gi\|89103950, gi\|... - gi\|89103950\|ref\|ZP_01176509.1\| COG3111: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45442426, gi\|... - gi\|45442426\|ref\|NP_993965.1\| hypothetical protein YP_2650 [Yersinia pestis biovar Microtus str. 9100... gi\|108808209, gi... - gi\|108808209\|ref\|YP_652125.1\| hypothetical protein YPA_2215 [Yersinia pestis Antiqua], gi\|108780122\|... gi\|108811521, gi... - gi\|229901787\|ref\|ZP_04516909.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229681716\|g... gi\|115348683, gi... - gi\|218930072\|ref\|YP_002347947.1\| hypothetical protein YPO3027 [Yersinia pestis CO92], gi\|16123204\|re... Q668J3\|Q668J3_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|145599407, gi... - gi\|145599407\|ref\|YP_001163483.1\| hypothetical protein YPDSF_2133 [Yersinia pestis Pestoides F], gi\|1... gi\|149365112, gi... - gi\|149365112\|ref\|ZP_01887147.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291525\|... gi\|77633116, gi\|... - gi\|77633116\|ref\|ZP_00795266.1\| COG3111: Uncharacterized conserved protein [Yersinia pestis Angola], ... gi\|166212525, gi... - gi\|166212525\|ref\|ZP_02238560.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167052199, gi... - gi\|167399695\|ref\|ZP_02305219.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167422661, gi... - gi\|167422661\|ref\|ZP_02314414.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167424533, gi... - gi\|167424533\|ref\|ZP_02316286.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167469639 - gi\|167469639\|ref\|ZP_02334343.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis FV-1] gi\|165921187, gi... - gi\|165926836\|ref\|ZP_02222668.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|166011154, gi... - gi\|166011154\|ref\|ZP_02232052.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ...	172.0	[0..1]	[128..1]
gi\|153948155, gi... - gi\|77629791\|ref\|ZP_00792377.1\| COG3111: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|170023639, gi... - gi\|170023639\|ref\|YP_001720144.1\| hypothetical protein YPK_1397 [Yersinia pseudotuberculosis YPIII], ...	171.0	[0..1]	[128..1]
gi\|238783889, gi... - gi\|77959009\|ref\|ZP_00823034.1\| COG3111: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	169.0	[0..1]	[128..1]
gi\|77962054, gi\|... - gi\|77962054\|ref\|ZP_00825880.1\| COG3111: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	165.0	[0..1]	[128..1]
gi\|37525341, gi\|... - gi\|37525341\|ref\|NP_928685.1\| hypothetical protein plu1385 [Photorhabdus luminescens subsp. laumondii...	164.0	[0..1]	[129..2]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFAAVIAV MALCSAPVMA AEQGGFSGPS ATQSQAGGFQ GPNGSVTTVE SAKSLRDDTW  60
   61 VTLRGNIVER ISDDLYVFKD ASGTINVDID HKRWNGVTVT PKDTVEIQGE VDKDWNSVEI 120
  121 DVKQIRKVNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1nnxA
Description:	Structure of the hypothetical protein ygiW from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits