YRC Public Data Repository - Protein Structure Prediction

Protein:	YGHE_ECOLI
Organism:	Escherichia coli
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGHE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|69951915, gi\|... - gi\|69951915\|ref\|ZP_00639527.1\| General secretion pathway L [Shewanella frigidimarina NCIMB 400], gi\|...	264.0	[0..2]	[286..113]
gi\|114045672, gi... - gi\|78689151\|ref\|ZP_00853816.1\| General secretion pathway L [Shewanella sp. MR-7], gi\|78511551\|gb\|EAP...	263.0	[0..2]	[286..113]
gi\|82495889, gi\|... - gi\|82495889\|ref\|ZP_00881462.1\| General secretion pathway L [Shewanella sp. MR-4], gi\|82406194\|gb\|EAP... gi\|78506862, gi\|... - gi\|78685484\|ref\|ZP_00850262.1\| General secretion pathway L [Shewanella sp. ANA-3], gi\|78506862\|gb\|EA...	262.0	[0..2]	[286..113]
gi\|91791498, gi\|... - gi\|91791498\|ref\|YP_561149.1\| general secretion pathway L [Shewanella denitrificans OS217], gi\|917135...	260.0	[0..2]	[286..113]
gi\|24345567, gi\|... - gi\|24371774\|ref\|NP_715816.1\| general secretion pathway protein L [Shewanella oneidensis MR-1], gi\|24... SO0174 - general secretion pathway protein L	259.0	[0..2]	[286..113]
gi\|77813394, gi\|... - gi\|77813394\|ref\|ZP_00812669.1\| General secretion pathway L [Shewanella putrefaciens CN-32], gi\|77811...	254.0	[0..2]	[286..113]
gi\|120560578, gi... - gi\|82741854\|ref\|ZP_00904565.1\| General secretion pathway L [Shewanella sp. W3-18-1], gi\|82720785\|gb\|...	254.0	[0..2]	[286..113]
gi\|78365996, gi\|... - gi\|78365996\|ref\|ZP_00836279.1\| General secretion pathway L [Shewanella sp. PV-4], gi\|78361897\|gb\|EAP...	247.0	[0..1]	[286..112]
gi\|68517297, gi\|... - gi\|68545429\|ref\|ZP_00584980.1\| General secretion pathway L [Shewanella amazonensis SB2B], gi\|6851729...	247.0	[0..2]	[286..115]
gi\|126176383, gi... - gi\|68541296\|ref\|ZP_00581041.1\| General secretion pathway L [Shewanella baltica OS155], gi\|68520949\|g...	246.0	[0..2]	[286..113]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHQQHMRNI AQWLQENGIT RATVAPDWMS IPCGFMACDA QRVICRIDEC RGWSAGLALA  60
   61 PVMFRAQLNE QDLPLSLTVV GIAPEKLSAW AGADAERLTV TALPAITTYG EPEGNLLTGP 120
  121 WQPRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	1w97L
Description:	cyto-EpsL: the cytoplasmic domain of EpsL, an inner membrane component of the type II secretion system of Vibrio cholerae
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYRKQWARWR VMILPILLIL VALAVERGVT LWSVSEQVAQ SRTQAEEQFL TLFPEQKRIV  60
   61 NLRSQVTMAL KKYRPQADDT RLLAELSAIA STLKSASLSD IEMRGFTFDQ KRQILHLQLR 120
  121 AANFASFDKL RSVLATDYVV QQDALQKEGD AVSGGVTLRR K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits