YRC Public Data Repository - Protein Structure Prediction

Protein:	YGFH_ECOLI
Organism:	Escherichia coli
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGFH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67917520, gi\|... - gi\|67917520\|ref\|ZP_00511126.1\| Acetyl-CoA hydrolase [Chlorobium limicola DSM 245], gi\|67784823\|gb\|EA...	511.0	[0..2]	[490..11]
gi\|68551074, gi\|... - gi\|68551074\|ref\|ZP_00590502.1\| Acetyl-CoA hydrolase [Pelodictyon phaeoclathratiforme BU-1], gi\|68242...	509.0	[0..3]	[490..12]
gi\|53730421, gi\|... - gi\|71908420\|ref\|YP_286007.1\| Acetyl-CoA hydrolase/transferase [Dechloromonas aromatica RCB], gi\|7184...	507.0	[0..3]	[490..12]
gi\|111616792, gi... - gi\|111616792\|ref\|ZP_01403823.1\| Acetyl-CoA hydrolase [Acidovorax avenae subsp. citrulli AAC00-1], gi...	503.0	[0..3]	[492..100]
gi\|91974802, gi\|... - gi\|91974802\|ref\|YP_567461.1\| Acetyl-CoA hydrolase [Rhodopseudomonas palustris BisB5], gi\|91681258\|gb...	499.0	[0..3]	[487..13]
gi\|86747629, gi\|... - gi\|86747629\|ref\|YP_484125.1\| Acetyl-CoA hydrolase [Rhodopseudomonas palustris HaA2], gi\|86570657\|gb\|...	496.0	[0..3]	[487..41]
gi\|66572221, gi\|... - gi\|66766889\|ref\|YP_241651.1\| CoA tranferase [Xanthomonas campestris pv. campestris str. 8004], gi\|66... gi\|167731721, gi... - gi\|188989961\|ref\|YP_001901971.1\| hypothetical protein xccb100_0566 [Xanthomonas campestris pv. campe... gi\|21233017, gi\|... - gi\|21233017\|ref\|NP_638934.1\| CoA tranferase [Xanthomonas campestris pv. campestris str. ATCC 33913],...	496.0	[0..3]	[492..11]
gi\|109702371, gi... - gi\|76792769\|ref\|ZP_00775265.1\| Acetyl-CoA hydrolase [Pseudoalteromonas atlantica T6c], gi\|76591951\|g...	495.0	[0..3]	[490..12]
gi\|91779691, gi\|... - gi\|91779691\|ref\|YP_554899.1\| Acetyl-CoA hydrolase [Burkholderia xenovorans LB400], gi\|91692351\|gb\|AB...	494.0	[0..3]	[491..11]
gi\|46313059, gi\|... - gi\|78062759\|ref\|YP_372667.1\| Acetyl-CoA hydrolase [Burkholderia sp. 383], gi\|77970644\|gb\|ABB12023.1\|...	493.0	[0..3]	[492..11]

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Predicted Domain #1

Region A:
Residues: [1-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQWTRMTA NEAAEIIQHN DMVAFSGFTP AGSPKALPTA IARRANEQHE AKKPYQIRLL  60
   61 TGASISAAAD DVLSDADAVS WRAPYQTSSG LRKKINQGAV SFVDLHLSEV AQMVNYGFFG 120
  121 DIDVAVIEAS ALAPDGRVWL TSGIGNAPTW LLRAKKVIIE LNHYHDPRVA ELADIVIPGA 180
  181 PPRRNSVSIF HAMDRVGTRY VQIDPKKIVA VVETNLPDAG NMLDKQNPMC QQIADNVVTF 240
  241 LLQEMAHGRI PPEFLPLQSG VGNINNAVMA RLGENPVIPP FMMYSEVLQE SVVHLLETGK 300
  301 ISGASASSLT ISADSLRKIY DNMDYFASRI VLRPQEISNN PEIIRRLGVI ALNVGLEFDI 360
  361 YGHANSTHVA GVDLMNGIGG SGDFERNAYL SIFMAPSIAK EGKISTVVPM CSHVDHSEHS 420
  421 VKVIITEQGI ADLRGLSPLQ RARTIIDNCA HPMYRDYLHR YLENAPGGHI HHDLSHVFDL 480
  481 HRNLIATGSM LG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	2nvvA
Description:	No description for 2nvvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits