YRC Public Data Repository - Protein Structure Prediction

Protein:	YGEF_ECOLI
Organism:	Escherichia coli
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGEF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74313419, gi\|... - gi\|74313419\|ref\|YP_311838.1\| hypothetical protein SSON_3010 [Shigella sonnei Ss046], gi\|73856896\|gb\|...	223.0	[0..1]	[134..1]
gi\|25359004, gi\|... - pir\|\|G85937 hypothetical protein Z4171 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12517343, gi\|... - gi\|15803371\|ref\|NP_289404.1\| hypothetical protein Z4171 [Escherichia coli O157:H7 EDL933], gi\|125173... gi\|217320090, gi... - gi\|217327723\|ref\|ZP_03443806.1\| hypothetical protein ESCCO14588_5429 [Escherichia coli O157:H7 str. ... gi\|13363179, gi\|... - gi\|15832961\|ref\|NP_311734.1\| hypothetical protein ECs3707 [Escherichia coli O157:H7], gi\|13363179\|db... gi\|195936455 - gi\|195936455\|ref\|ZP_03081837.1\| hypothetical protein EscherichcoliO157_08317 [Escherichia coli O157:... gi\|13363179, gi\|... - gi\|15832961\|ref\|NP_311734.1\| hypothetical protein ECs3707 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254594190, gi... - gi\|254794790\|ref\|YP_003079627.1\| hypothetical protein ECSP_3804 [Escherichia coli O157:H7 str. TW143...	213.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRNINNSL PLQPLVPDQE NKNKKNEEKS VNPVKITMGS GLNYIEQESL GGKYLTHDLS  60
   61 IKIADISEEI IQQAILSAMS IYKFSITDDL MSMAVNELIK LTKIENNVDL NKFTTICTDV 120
  121 LSPRVTRHNK EKNKRHSTLL KNPLFNFH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.891	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits