YRC Public Data Repository - Protein Structure Prediction

Protein:	YGDK_ECOLI
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGDK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91191501, gi\|... - gi\|91223415\|ref\|ZP_01258680.1\| hypothetical protein V12G01_22153 [Vibrio alginolyticus 12G01], gi\|91...	220.0	[0..1]	[144..1]
gi\|75856139, gi\|... - gi\|75856139\|ref\|ZP_00763773.1\| COG2166: SufE protein probably involved in Fe-S center assembly [Vibr...	219.0	[0..1]	[141..1]
gi\|27361302, gi\|... - gi\|27365156\|ref\|NP_760684.1\| hypothetical protein VV1_1803 [Vibrio vulnificus CMCP6], gi\|27361302\|gb...	218.0	[0..1]	[144..1]
gi\|54310108, gi\|... - gi\|54310108\|ref\|YP_131128.1\| hypothetical protein PBPRA2992 [Photobacterium profundum SS9], gi\|46914...	218.0	[0..1]	[144..1]
gi\|90021067, gi\|... - gi\|90021067\|ref\|YP_526894.1\| cysteine desulfuration protein SufE [Saccharophagus degradans 2-40], gi...	217.0	[0..1]	[144..1]
gi\|28807365 - gi\|28807365\|dbj\|BAC60630.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899141, gi\|... - gi\|28899141\|ref\|NP_798746.1\| hypothetical protein VP2367 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	216.0	[0..6]	[144..4]
gi\|90325434, gi\|... - gi\|90413502\|ref\|ZP_01221493.1\| hypothetical protein P3TCK_25295 [Photobacterium profundum 3TCK], gi\|...	215.0	[0..1]	[144..1]
gi\|37680790, gi\|... - gi\|37680790\|ref\|NP_935399.1\| hypothetical protein VV2606 [Vibrio vulnificus YJ016], gi\|37199539\|dbj\|...	214.0	[0..1]	[144..7]
gi\|218321722, gi... - gi\|218708703\|ref\|YP_002416324.1\| hypothetical protein VS_0682 [Vibrio splendidus LGP32], gi\|21832172... gi\|86145665, gi\|... - gi\|86145665\|ref\|ZP_01063995.1\| hypothetical protein MED222_01887 [Vibrio sp. MED222], gi\|85836636\|gb...	214.0	[0..1]	[145..1]
gi\|84388930, gi\|... - gi\|84388930\|ref\|ZP_00991138.1\| hypothetical protein V12B01_09621 [Vibrio splendidus 12B01], gi\|84376...	213.0	[0..4]	[145..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPQFAGHP FGTTVTAETL RNTFAPLTQW EDKYRQLIML GKQLPALPDE LKAQAKEIAG  60
   61 CENRVWLGYT VAENGKMHFF GDSEGRIVRG LLAVLLTAVE GKTAAELQAQ SPLALFDELG 120
  121 LRAQLSASRS QGLNALSEAI IAATKQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1ni7A
Description:	Hypothetical protein YgdK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.256292883613773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: