YRC Public Data Repository - Protein Structure Prediction

Protein:	YGCL_ECOLI
Organism:	Escherichia coli
Length:	502 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGCL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90580716, gi\|... - gi\|90580716\|ref\|ZP_01236520.1\| hypothetical protein VAS14_16302 [Vibrio angustum S14], gi\|90438173\|g...	502.0	[0..1]	[494..1]
gi\|89052193, gi\|... - gi\|89072092\|ref\|ZP_01158688.1\| hypothetical protein SKA34_08658 [Photobacterium sp. SKA34], gi\|89052...	498.0	[0..1]	[494..1]
gi\|37524747, gi\|... - gi\|37524747\|ref\|NP_928091.1\| hypothetical protein plu0746 [Photorhabdus luminescens subsp. laumondii...	495.0	[0..1]	[494..1]
gi\|75235640 - gi\|75235640\|ref\|ZP_00719814.1\| hypothetical protein EcolE1_01002624 [Escherichia coli E110019]	493.0	[0..1]	[486..3]
gi\|39996487, gi\|... - gi\|39996487\|ref\|NP_952438.1\| hypothetical protein GSU1385 [Geobacter sulfurreducens PCA], gi\|3998336...	492.0	[0..1]	[497..1]
gi\|75230029 - gi\|75230029\|ref\|ZP_00716539.1\| hypothetical protein EcolB7_01001717 [Escherichia coli B7A]	487.0	[0..1]	[486..3]
gi\|75187488 - gi\|75187488\|ref\|ZP_00700755.1\| hypothetical protein EcolE_01000719 [Escherichia coli E24377A]	486.0	[0..1]	[486..3]
gi\|208726806, gi... - gi\|208807005\|ref\|ZP_03249342.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|208814153, gi... - gi\|208814153\|ref\|ZP_03255482.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|208738547, gi... - gi\|208818424\|ref\|ZP_03258744.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str... gi\|209157099, gi... - gi\|209395699\|ref\|YP_002272224.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 st... gi\|168778745, gi... - gi\|189003534\|gb\|EDU72520.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|189372126, gi... - gi\|189372126\|gb\|EDU90542.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|189377504, gi... - gi\|189377504\|gb\|EDU95920.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|195939473 - gi\|195939473\|ref\|ZP_03084855.1\| hypothetical protein EscherichcoliO157_24183 [Escherichia coli O157:... gi\|168755507, gi... - gi\|189357248\|gb\|EDU75667.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|168762838, gi... - gi\|189366897\|gb\|EDU85313.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|168768854, gi... - gi\|189362094\|gb\|EDU80513.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|187769577, gi... - gi\|187769577\|gb\|EDU33421.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|188015793, gi... - gi\|188015793\|gb\|EDU53915.1\| CRISPR-associated protein, Cse1 family [Escherichia coli O157:H7 str. EC... gi\|13363085, gi\|... - gi\|15832868\|ref\|NP_311641.1\| hypothetical protein ECs3614 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25391294, gi\|... - pir\|\|G85925 hypothetical protein Z4069 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15803277, gi\|... - gi\|15803277\|ref\|NP_289309.1\| hypothetical protein Z4069 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|13363085, gi\|... - gi\|15832868\|ref\|NP_311641.1\| hypothetical protein ECs3614 [Escherichia coli O157:H7], gi\|13363085\|db... gi\|254794700, gi... - gi\|254794700\|ref\|YP_003079537.1\| hypothetical protein ECSP_3708 [Escherichia coli O157:H7 str. TW143...	484.0	[0..1]	[486..1]
gi\|88774758, gi\|... - gi\|88793932\|ref\|ZP_01109644.1\| hypothetical protein MADE_03886 [Alteromonas macleodii 'Deep ecotype'...	482.0	[0..1]	[490..1]
gi\|77544648, gi\|... - gi\|77918565\|ref\|YP_356380.1\| hypothetical protein Pcar_0957 [Pelobacter carbinolicus DSM 2380], gi\|7...	478.0	[0..1]	[495..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLIDNWIP VRPRNGGKVQ IINLQSLYCS RDQWRLSLPR DDMELAALAL LVCIGQIIAP  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [62-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDDVEFRHRI MNPLTEDEFQ QLIAPWIDMF YLNHAEHPFM QTKGVKANDV TPMEKLLAGV  60
   61 SGATNCAFVN QPGQGEALCG GCTAIALFNQ ANQAPGFGGG FKSGLRGGTP VTTFVRGIDL 120
  121 RSTVLLNVLT LPRLQKQFPN ESHTENQPTW IKPIKSNESI PASSIGFVRG LFWQPAHIEL 180
  181 CDPIGIGKCS CCGQESNLRY TGFLKEKFTF TVNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [276-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWPHPHSPCL VTVKKGEVEE KFLAFTTSAP SWTQISRVVV DKIIQNENGN RVAAVVNQFR  60
   61 NIAPQSPLEL IMGGYRNNQA SIL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [359-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRHDVLMFN QGWQQYGNVI NEIVTVGLGY KTALRKALYT FAEGFKNKDF KGAGVSVHET  60
   61 AERHFYRQSE LLIPDVLANV NFSQADEVIA DLRDKLHQLC EMLFNQSVAP YAHHPKLIST 120
  121 LALARATLYK HLRELKPQGG PSNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.979	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits