YRC Public Data Repository - Protein Structure Prediction

Protein:	YGCH_ECOLI
Organism:	Escherichia coli
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGCH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82778123, gi\|... - gi\|82778123\|ref\|YP_404472.1\| hypothetical protein SDY_2955 [Shigella dysenteriae Sd197], gi\|81242271...	276.0	[0..1]	[199..1]
gi\|68177965, gi\|... - gi\|95930836\|ref\|ZP_01313567.1\| CRISPR-associated protein, CT1974 [Desulfuromonas acetoxidans DSM 684...	209.0	[0..1]	[198..1]
gi\|39983372, gi\|... - gi\|39996491\|ref\|NP_952442.1\| CRISPR-associated Cse3 family protein [Geobacter sulfurreducens PCA], g...	209.0	[0..1]	[198..1]
gi\|194407237, gi... - gi\|194448933\|ref\|YP_002046897.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. ... gi\|167993180, gi... - gi\|205328771\|gb\|EDZ15535.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|205338034, gi... - gi\|205338034\|gb\|EDZ24798.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|16766245, gi\|... - gi\|16766245\|ref\|NP_461860.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421489\|... lcl\|NC_016856.1_... - [gene=ygcH] [protein=putative cytoplasmic protein] [protein_id=YP_005239052.1] [location=complement(...	203.0	[0..1]	[198..1]
gi\|90438177, gi\|... - gi\|90580720\|ref\|ZP_01236524.1\| hypothetical protein VAS14_16322 [Vibrio angustum S14], gi\|90438177\|g...	202.0	[0..1]	[197..1]
gi\|62129074, gi\|... - gi\|62181441\|ref\|YP_217858.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	202.0	[0..1]	[198..1]
gi\|75235644, gi\|... - gi\|75235644\|ref\|ZP_00719818.1\| hypothetical protein EcolE1_01002628 [Escherichia coli E110019], gi\|1...	198.0	[0..1]	[198..1]
gi\|82545171, gi\|... - gi\|82545171\|ref\|YP_409118.1\| hypothetical protein SBO_2764 [Shigella boydii Sb227], gi\|81246582\|gb\|A...	198.0	[0..1]	[198..1]
gi\|187733988, gi... - gi\|75176379\|ref\|ZP_00696523.1\| hypothetical protein SboyB_01003608 [Shigella boydii BS512], gi\|18773...	198.0	[0..1]	[198..1]
gi\|75256963, gi\|... - gi\|75256963\|ref\|ZP_00728539.1\| hypothetical protein EcolE2_01003212 [Escherichia coli E22], gi\|19306... gi\|191166800, gi... - gi\|75230033\|ref\|ZP_00716543.1\| hypothetical protein EcolB7_01001721 [Escherichia coli B7A], gi\|19116...	197.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSKVIIAR AWSRDLYQLH QGLWHLFPNR PDAARDFLFH VEKRNTPEGC HVLLQSAQMP  60
   61 VSTAVATVIK TKQVEFQLQV GVPLYFRLRA NPIKTILDNQ KRLDSKGNIK RCRVPLIKEA 120
  121 EQIAWLQRKL GNAARVEDVH PISERPQYFS GDGKSGKIQT VCFEGVLTIN DAPALIDLVQ 180
  181 QGIGPAKSMG CGLLSLAPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	1wj9A
Description:	Crystal structure of a CRISPR-associated protein from thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits