YRC Public Data Repository - Protein Structure Prediction

Protein:	YGBE_ECOLI
Organism:	Escherichia coli
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGBE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77976015 - gi\|77976015\|ref\|ZP_00831548.1\| hypothetical protein YfreA_01000110 [Yersinia frederiksenii ATCC 3364...	144.0	[0..5]	[107..22]
gi\|188488828, gi... - gi\|75512340\|ref\|ZP_00734892.1\| hypothetical protein Ecol5_01003435 [Escherichia coli 53638], gi\|1884...	141.0	[0..1]	[107..1]
gi\|30042362, gi\|... - gi\|30064106\|ref\|NP_838277.1\| hypothetical protein S2965 [Shigella flexneri 2a str. 2457T], gi\|300423... gi\|24053168, gi\|... - gi\|24114044\|ref\|NP_708554.1\| hypothetical protein SF2772 [Shigella flexneri 2a str. 301], gi\|2405316...	140.0	[0..1]	[107..1]
gi\|168762849, gi... - gi\|189366845\|gb\|EDU85261.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|168768843, gi... - gi\|189362109\|gb\|EDU80528.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168774716, gi... - gi\|187769657\|gb\|EDU33501.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|168778734, gi... - gi\|189003401\|gb\|EDU72387.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|13363074, gi\|... - gi\|15832857\|ref\|NP_311630.1\| hypothetical protein ECs3603 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168749924, gi... - gi\|188015786\|gb\|EDU53908.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189357242, gi... - gi\|189357242\|gb\|EDU75661.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|13363074, gi\|... - gi\|15832857\|ref\|NP_311630.1\| putative cytochrome oxidase subunit [Escherichia coli O157:H7], gi\|1336... gi\|218706243, gi... - gi\|218706243\|ref\|YP_002413762.1\| hypothetical protein ECUMN_3073 [Escherichia coli UMN026], gi\|21843... gi\|209761690, gi... - pir\|\|C91079 probable cytochrome oxidase subunit [imported] - Escherichia coli (strain O157:H7, subst... gi\|12517203, gi\|... - gi\|15803266\|ref\|NP_289298.1\| hypothetical protein Z4057 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|208733919, gi... - gi\|208812642\|ref\|ZP_03253971.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|254794689, gi... - gi\|254794689\|ref\|YP_003079526.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|208741346, gi... - gi\|208821223\|ref\|ZP_03261543.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|209162036, gi... - gi\|209400636\|ref\|YP_002272212.1\| hypothetical protein ECH74115_4001 [Escherichia coli O157:H7 str. E... gi\|217327742, gi... - gi\|217327742\|ref\|ZP_03443825.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|189372175, gi... - gi\|189372175\|gb\|EDU90591.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168800170, gi... - gi\|189377466\|gb\|EDU95882.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|195939462 - gi\|195939462\|ref\|ZP_03084844.1\| hypothetical protein EscherichcoliO157_24128 [Escherichia coli O157:... gi\|208725826, gi... - gi\|208806025\|ref\|ZP_03248362.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi...	140.0	[0..1]	[107..1]
gi\|117624984, gi... - gi\|117624984\|ref\|YP_853972.1\| hypothetical protein APECO1_3774 [Escherichia coli APEC O1], gi\|115514... gi\|91073691, gi\|... - gi\|91212117\|ref\|YP_542103.1\| hypothetical protein UTI89_C3120 [Escherichia coli UTI89], gi\|91073691\|... gi\|215266141, gi... - gi\|215488069\|ref\|YP_002330500.1\| hypothetical protein E2348C_3019 [Escherichia coli O127:H6 str. E23... gi\|218366511, gi... - gi\|218559742\|ref\|YP_002392655.1\| hypothetical protein ECS88_3020 [Escherichia coli S88], gi\|21836651... gi\|26109562, gi\|... - gi\|26249155\|ref\|NP_755195.1\| hypothetical protein c3316 [Escherichia coli CFT073], gi\|26109562\|gb\|AA... gi\|237706621, gi... - gi\|237706621\|ref\|ZP_04537102.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227888292, gi... - gi\|227888292\|ref\|ZP_04006097.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783456...	139.0	[0..1]	[107..1]
gi\|110344483, gi... - gi\|110642891\|ref\|YP_670621.1\| hypothetical protein ECP_2731 [Escherichia coli 536], gi\|110344483\|gb\|... gi\|75241860, gi\|... - gi\|75241860\|ref\|ZP_00725679.1\| COG0841: Cation/multidrug efflux pump [Escherichia coli F11], gi\|1911... gi\|218428440, gi... - gi\|218690876\|ref\|YP_002399088.1\| hypothetical protein ECED1_3205 [Escherichia coli ED1a], gi\|2184284...	138.0	[0..1]	[107..1]
gi\|22124737, gi\|... - gi\|22124737\|ref\|NP_668160.1\| hypothetical protein y0826 [Yersinia pestis KIM], gi\|21957555\|gb\|AAM844... gi\|45440181, gi\|... - gi\|45440181\|ref\|NP_991720.1\| hypothetical protein YP_0324 [Yersinia pestis biovar Microtus str. 9100...	137.0	[0..5]	[107..8]
gi\|165925746, gi... - gi\|165925746\|ref\|ZP_02221578.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166010000, gi... - gi\|166010000\|ref\|ZP_02230898.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|25372000 - pir\|\|AE0408 probable membrane protein YPO3363 [imported] - Yersinia pestis (strain CO92) gi\|166214095, gi... - gi\|166214095\|ref\|ZP_02240130.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167399557, gi... - gi\|167399557\|ref\|ZP_02305081.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|218930381, gi... - gi\|218930381\|ref\|YP_002348256.1\| hypothetical protein YPO3363 [Yersinia pestis CO92], gi\|16123513\|re... gi\|167421688, gi... - gi\|167421688\|ref\|ZP_02313441.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51595118, gi\|... - gi\|51595118\|ref\|YP_069309.1\| hypothetical protein YPTB0768 [Yersinia pseudotuberculosis IP 32953], g... gi\|167057323, gi... - gi\|167423153\|ref\|ZP_02314906.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229687049, gi... - gi\|229899557\|ref\|ZP_04514698.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... Q66EC5\|Q66EC5_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|167469866 - gi\|167469866\|ref\|ZP_02334570.1\| hypothetical protein YpesF_18734 [Yersinia pestis FV-1] gi\|229896470, gi... - gi\|229896470\|ref\|ZP_04511638.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... gi\|169752182, gi... - gi\|170025648\|ref\|YP_001722153.1\| hypothetical protein YPK_3433 [Yersinia pseudotuberculosis YPIII], ... gi\|229695356, gi... - gi\|229838990\|ref\|ZP_04459149.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|89105872, gi\|... - gi\|89105872\|ref\|ZP_01178384.1\| COG0477: Permeases of the major facilitator superfamily [Yersinia pes... gi\|108808771, gi... - gi\|108808771\|ref\|YP_652687.1\| hypothetical protein YPA_2780 [Yersinia pestis Antiqua], gi\|108780684\|... gi\|229901108, gi... - gi\|229901108\|ref\|ZP_04516231.1\| conserved inner membrane protein [Yersinia pestis Nepal516], gi\|2296... gi\|186894131, gi... - gi\|186894131\|ref\|YP_001871243.1\| hypothetical protein YPTS_0802 [Yersinia pseudotuberculosis PB1/+],... gi\|145600254, gi... - gi\|145600254\|ref\|YP_001164330.1\| hypothetical protein YPDSF_2997 [Yersinia pestis Pestoides F], gi\|1... gi\|153997593, gi... - gi\|153997593\|ref\|ZP_02022693.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289230\|... gi\|162419927, gi... - gi\|77635100\|ref\|ZP_00797189.1\| COG0477: Permeases of the major facilitator superfamily [Yersinia pes... gi\|153947709, gi... - gi\|77631744\|ref\|ZP_00794330.1\| COG0477: Permeases of the major facilitator superfamily [Yersinia pse...	136.0	[0..5]	[107..2]
gi\|238718994, gi... - gi\|77962833\|ref\|ZP_00826649.1\| COG0477: Permeases of the major facilitator superfamily [Yersinia mol...	133.0	[0..5]	[107..2]
gi\|77979623, gi\|... - gi\|77979623\|ref\|ZP_00835040.1\| hypothetical protein YintA_01000492 [Yersinia intermedia ATCC 29909],...	133.0	[0..5]	[107..2]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNSHNITLT NNDSLTEDEE TTWSLPGAVV GFISWLFALA MPMLIYGSNT LFFFIYTWPF  60
   61 FLALMPVAVV VGIALHSLMD GKLRYSIVFT LVTVGIMFGA LFMWLLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits