YRC Public Data Repository - Protein Structure Prediction

Protein:	YFIK_ECOLI
Organism:	Escherichia coli
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFIK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76581979, gi\|... - gi\|76817506\|ref\|YP_336716.1\| LysE family protein [Burkholderia pseudomallei 1710b], gi\|76581979\|gb\|A...	164.0	[0..1]	[194..439]
gi\|67665704, gi\|... - gi\|67665704\|ref\|ZP_00462964.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia HI2424]... gi\|67093808, gi\|... - gi\|67658720\|ref\|ZP_00456090.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia AU 1054...	161.0	[0..2]	[194..246]
gi\|111617741, gi... - gi\|111617741\|ref\|ZP_01404769.1\| Lysine exporter protein (LYSE/YGGA) [Acidovorax avenae subsp. citrul...	158.0	[0..1]	[195..697]
gi\|67548078, gi\|... - gi\|67548078\|ref\|ZP_00425973.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia vietnamiensis G4], ...	138.0	[0..1]	[193..110]
gi\|83648725, gi\|... - gi\|83648725\|ref\|YP_437160.1\| putative threonine efflux protein [Hahella chejuensis KCTC 2396], gi\|83...	136.0	[0..3]	[194..5]
gi\|34495643, gi\|... - gi\|34495643\|ref\|NP_899858.1\| homoserine/homoserine lactone efflux protein [Chromobacterium violaceum...	135.0	[0..1]	[193..1]
gi\|89152072, gi\|... - gi\|89199797\|ref\|ZP_01178554.1\| Lysine exporter protein (LYSE/YGGA) [Bacillus cereus subsp. cytotoxis...	133.0	[0..3]	[195..1]
gi\|65319651 - gi\|65319651\|ref\|ZP_00392610.1\| COG1280: Putative threonine efflux protein [Bacillus anthracis str. A...	132.0	[0..3]	[195..21]
gi\|30020423, gi\|... - gi\|30020423\|ref\|NP_832054.1\| amino acid transporter LysE [Bacillus cereus ATCC 14579], gi\|29895974\|g... gi\|228673622, gi... - gi\|229109777\|ref\|ZP_04239362.1\| Homoserine/threonine efflux protein [Bacillus cereus Rock1-15], gi\|2... gi\|228632866, gi... - gi\|229150557\|ref\|ZP_04278772.1\| Homoserine/threonine efflux protein [Bacillus cereus m1550], gi\|2286... gi\|228638652, gi... - gi\|229144930\|ref\|ZP_04273327.1\| Homoserine/threonine efflux protein [Bacillus cereus BDRD-ST24], gi\|... gi\|228655809, gi... - gi\|229127732\|ref\|ZP_04256721.1\| Homoserine/threonine efflux protein [Bacillus cereus BDRD-Cer4], gi\|... gi\|218235872, gi... - gi\|218235872\|ref\|YP_002367038.1\| putative homoserine/threonine efflux protein [Bacillus cereus B4264...	132.0	[0..3]	[195..2]
gi\|53720860, gi\|... - gi\|53720860\|ref\|YP_109846.1\| putative amino acid transport protein [Burkholderia pseudomallei K96243... gi\|194512458, gi... - gi\|254186314\|ref\|ZP_04892831.1\| translocator protein, LysE family [Burkholderia pseudomallei Pasteur... gi\|194518065, gi... - gi\|254194638\|ref\|ZP_04901069.1\| translocator protein, LysE family [Burkholderia pseudomallei S13], g...	130.0	[0..1]	[194..31]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTLLSAFW TYTLITAMTP GPNNILALSS ATSHGFRQST RVLAGMSLGF LIVMLLCAGI  60
   61 SFSLAVIDPA AVHLLSWAGA AYIVWLAWKI ATSPTKEDGL QAKPISFWAS FALQFVNVKI 120
  121 ILYGVTALST FVLPQTQALS WVVGVSVLLA MIGTFGNVCW ALAGHLFQRL FRQYGRQLNI 180
  181 VLALLLVYCA VRIFY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.259637
Match:	PF01810.9
Description:	No description for PF01810.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits