YRC Public Data Repository - Protein Structure Prediction

Protein:	YFIH_ECOLI
Organism:	Escherichia coli
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFIH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|73856629, gi\|... - gi\|74313152\|ref\|YP_311571.1\| hypothetical protein SSON_2719 [Shigella sonnei Ss046], gi\|73856629\|gb\|... gi\|110806536, gi... - gi\|110806536\|ref\|YP_690056.1\| hypothetical protein SFV_2659 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|52695957, gi\|... - gi\|52695957\|pdb\|1U05\|B Chain B, Crystal Structure Of Protein Yfih From Shigella Flexneri, Pfam Duf15... gi\|24053039, gi\|... - gi\|24113933\|ref\|NP_708443.1\| hypothetical protein SF2654 [Shigella flexneri 2a str. 301], gi\|2405303... gi\|30042248, gi\|... - gi\|30063992\|ref\|NP_838163.1\| hypothetical protein S2830 [Shigella flexneri 2a str. 2457T], gi\|300422...	374.0	[0..1]	[243..1]
gi\|81246457, gi\|... - gi\|82545046\|ref\|YP_408993.1\| hypothetical protein SBO_2628 [Shigella boydii Sb227], gi\|81246457\|gb\|A... gi\|187430406, gi... - gi\|75178202\|ref\|ZP_00698261.1\| COG1496: Uncharacterized conserved protein [Shigella boydii BS512], g...	374.0	[0..1]	[243..1]
gi\|227834800, gi... - gi\|227888160\|ref\|ZP_04005965.1\| protein of hypothetical function DUF152 [Escherichia coli 83972], gi... gi\|26109362, gi\|... - gi\|26248956\|ref\|NP_754996.1\| hypothetical protein c3115 [Escherichia coli CFT073], gi\|26109362\|gb\|AA...	373.0	[0..1]	[243..1]
gi\|124500886, gi... - gi\|124527994\|ref\|ZP_01699347.1\| protein of unknown function DUF152 [Escherichia coli B], gi\|12450088... gi\|169754056, gi... - gi\|170019128\|ref\|YP_001724082.1\| hypothetical protein EcolC_1088 [Escherichia coli ATCC 8739], gi\|16... gi\|194439335, gi... - gi\|83585275\|ref\|ZP_00923924.1\| COG1496: Uncharacterized conserved protein [Escherichia coli 101-1], ...	373.0	[0..1]	[243..1]
gi\|62128867, gi\|... - gi\|62181234\|ref\|YP_217651.1\| hypothetical protein SC2664 [Salmonella enterica subsp. enterica serova... gi\|224584514, gi... - gi\|224584514\|ref\|YP_002638312.1\| hypothetical protein SPC_2771 [Salmonella enterica subsp. enterica ... gi\|167553891, gi... - gi\|205321778\|gb\|EDZ09617.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp. ent...	373.0	[0..1]	[243..1]
gi\|56128885, gi\|... - gi\|56414628\|ref\|YP_151703.1\| hypothetical protein SPA2522 [Salmonella enterica subsp. enterica serov... gi\|197095032, gi... - gi\|197363555\|ref\|YP_002143192.1\| hypothetical protein SSPA2347 [Salmonella enterica subsp. enterica ... gi\|197213081, gi... - gi\|197249378\|ref\|YP_002147564.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp...	372.0	[0..1]	[243..1]
gi\|199605750, gi... - gi\|200388652\|ref\|ZP_03215264.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp.... gi\|204321326, gi... - gi\|204929607\|ref\|ZP_03220681.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp.... gi\|194456270, gi... - gi\|194469906\|ref\|ZP_03075890.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198242740, gi... - gi\|198242740\|ref\|YP_002216672.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp... gi\|194404382, gi... - gi\|194445719\|ref\|YP_002041925.1\| hypothetical protein SNSL254_A2876 [Salmonella enterica subsp. ente... gi\|16421208, gi\|... - gi\|16765977\|ref\|NP_461592.1\| hypothetical protein STM2661 [Salmonella typhimurium LT2], gi\|16421208\|... gi\|194449148, gi... - gi\|194449148\|ref\|YP_002046667.1\| hypothetical protein SeHA_C2878 [Salmonella enterica subsp. enteric... gi\|168244682, gi... - gi\|205336467\|gb\|EDZ23231.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp. ent... gi\|205348996, gi... - gi\|205348996\|gb\|EDZ35627.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp. ent... gi\|167992439, gi... - gi\|205329294\|gb\|EDZ16058.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp. ent... gi\|168234181, gi... - gi\|205331827\|gb\|EDZ18591.1\| conserved hypothetical protein TIGR00726 [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=yfiH] [protein=hypothetical protein] [protein_id=YP_005238783.1] [location=complement(2858736....	372.0	[0..1]	[243..1]
gi\|110344348, gi... - gi\|110642756\|ref\|YP_670486.1\| hypothetical protein ECP_2596 [Escherichia coli 536], gi\|110344348\|gb\|... gi\|190905146, gi... - gi\|75236017\|ref\|ZP_00720151.1\| COG1496: Uncharacterized conserved protein [Escherichia coli F11], gi...	372.0	[0..1]	[243..1]
gi\|217327105, gi... - gi\|217327105\|ref\|ZP_03443188.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|195940188 - gi\|195940188\|ref\|ZP_03085570.1\| hypothetical protein EscherichcoliO157_27979 [Escherichia coli O157:... gi\|189376168, gi... - gi\|189376168\|gb\|EDU94584.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|209762692, gi... - pir\|\|F85905 hypothetical protein yfiH [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168789496, gi... - gi\|189370895\|gb\|EDU89311.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189003247, gi... - gi\|189003247\|gb\|EDU72233.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|12517017, gi\|... - gi\|15803117\|ref\|NP_289148.1\| hypothetical protein Z3887 [Escherichia coli O157:H7 EDL933], gi\|125170... gi\|209396881, gi... - gi\|209396881\|ref\|YP_002272066.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 ... gi\|13362927, gi\|... - gi\|15832710\|ref\|NP_311483.1\| hypothetical protein ECs3456 [Escherichia coli O157:H7], gi\|13362927\|db... gi\|208741761, gi... - gi\|208821638\|ref\|ZP_03261958.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|208813817, gi... - gi\|208813817\|ref\|ZP_03255146.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|208808614, gi... - gi\|208808614\|ref\|ZP_03250951.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|168752066, gi... - gi\|188014004\|gb\|EDU52126.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168773479, gi... - gi\|187770646\|gb\|EDU34490.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|13362927, gi\|... - gi\|15832710\|ref\|NP_311483.1\| hypothetical protein ECs3456 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189359595, gi... - gi\|189359595\|gb\|EDU78014.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189367252, gi... - gi\|189367252\|gb\|EDU85668.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354553, gi... - gi\|189354553\|gb\|EDU72972.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254794541, gi... - gi\|254794541\|ref\|YP_003079378.1\| hypothetical protein ECSP_3540 [Escherichia coli O157:H7 str. TW143...	372.0	[0..1]	[243..1]
gi\|1236632 - gi\|1236632\|gb\|AAA92958.1\| YfiH	371.0	[0..1]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLIVPQWP QPKGVAACSS TRIGGVSLPP YDSLNLGAHC GDNPDHVEEN RKRLFAAGNL  60
   61 PSKPVWLEQV HGKDVLKLTG EPYASKRADA SYSNTPGTVC AVMTADCLPV LFCNRAGTEV 120
  121 AAAHAGWRGL CAGVLEETVS CFADNPENIL AWLGPAIGPR AFEVGGEVRE AFMAVDAKAS 180
  181 AAFIQHGDKY LADIYQLARQ RLANVGVEQI FGGDRCTYTE NETFFSYRRD KTTGRMASFI 240
  241 WLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1z9tA
Description:	Crystal structure of Hypothetical UPF0124 protein yfiH (np_417084.1) from Escherichia coli K12 at 1.54 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits