YRC Public Data Repository - Protein Structure Prediction

Protein:	YFGD_ECOLI
Organism:	Escherichia coli
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFGD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|22125309, gi\|... - gi\|22125309\|ref\|NP_668732.1\| oxidoreductase [Yersinia pestis KIM], gi\|21958186\|gb\|AAM84983.1\|AE01374... gi\|45437331, gi\|... - gi\|45442466\|ref\|NP_994005.1\| putative oxidoreductase [Yersinia pestis biovar Microtus str. 91001], g...	149.0	[0..1]	[118..34]
gi\|165916114, gi... - gi\|89104857\|ref\|ZP_01177389.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family... gi\|108808255, gi... - gi\|108808255\|ref\|YP_652171.1\| putative arsenate reductase [Yersinia pestis Antiqua], gi\|108780168\|gb... gi\|229681667, gi... - gi\|229901738\|ref\|ZP_04516860.1\| predicted oxidoreductase [Yersinia pestis Nepal516], gi\|229681667\|gb... gi\|165921271, gi... - gi\|165926920\|ref\|ZP_02222752.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Orientalis... gi\|149365069, gi... - gi\|149365069\|ref\|ZP_01887104.1\| putative arsenate reductase [Yersinia pestis CA88-4125], gi\|14929148... gi\|145211144, gi... - gi\|145599448\|ref\|YP_001163524.1\| arsenate reductase [Yersinia pestis Pestoides F], gi\|145211144\|gb\|A... gi\|51597107, gi\|... - gi\|51597107\|ref\|YP_071298.1\| putative arsenate reductase [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|25304022 - pir\|\|AE0373 probable arsenate reductase YPO3070 [imported] - Yersinia pestis (strain CO92) gi\|165989834, gi... - gi\|166011156\|ref\|ZP_02232054.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Antiqua st... gi\|15981023, gi\|... - gi\|218930115\|ref\|YP_002347990.1\| putative arsenate reductase [Yersinia pestis CO92], gi\|16123247\|ref... gi\|166206375, gi... - gi\|166212444\|ref\|ZP_02238479.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Antiqua st... gi\|167398730, gi... - gi\|167398730\|ref\|ZP_02304254.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Antiqua st... gi\|162421853, gi... - gi\|77636340\|ref\|ZP_00798415.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family... gi\|166958332, gi... - gi\|167422741\|ref\|ZP_02314494.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Orientalis... gi\|229687638, gi... - gi\|229899236\|ref\|ZP_04514379.1\| predicted oxidoreductase [Yersinia pestis biovar Orientalis str. Ind... gi\|152961294, gi... - gi\|77629834\|ref\|ZP_00792420.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family... gi\|167056402, gi... - gi\|167424520\|ref\|ZP_02316273.1\| arsenate reductase (glutaredoxin) [Yersinia pestis biovar Mediaevali... gi\|229895734, gi... - gi\|229895734\|ref\|ZP_04510905.1\| predicted oxidoreductase [Yersinia pestis Pestoides A], gi\|229701540... Q668E9\|Q668E9_YERPS - Putative arsenate reductase - Yersinia pseudotuberculosis gi\|167470405 - gi\|167470405\|ref\|ZP_02335109.1\| putative oxidoreductase [Yersinia pestis FV-1] gi\|229695036, gi... - gi\|229838670\|ref\|ZP_04458829.1\| predicted oxidoreductase [Yersinia pestis biovar Orientalis str. PEX... gi\|169750131, gi... - gi\|170023597\|ref\|YP_001720102.1\| arsenate reductase [Yersinia pseudotuberculosis YPIII], gi\|16975013... gi\|186896198, gi... - gi\|186896198\|ref\|YP_001873310.1\| arsenate reductase [Yersinia pseudotuberculosis PB1/+], gi\|18669922...	147.0	[0..2]	[118..1]
gi\|27361399, gi\|... - gi\|27365252\|ref\|NP_760780.1\| putative arsenate reductase [Vibrio vulnificus CMCP6], gi\|27361399\|gb\|A...	147.0	[0..3]	[118..5]
gi\|47572214 - gi\|47572214\|ref\|ZP_00242259.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family... gi\|124260305, gi... - gi\|124267530\|ref\|YP_001021534.1\| arsenate reductase [Methylibium petroleiphilum PM1], gi\|124260305\|g...	147.0	[0..2]	[118..1]
gi\|37199442, gi\|... - gi\|37680693\|ref\|NP_935302.1\| arsenate reductase [Vibrio vulnificus YJ016], gi\|37199442\|dbj\|BAC95273....	147.0	[0..3]	[118..5]
gi\|88062841 - gi\|88062841\|gb\|ABD39042.1\| arsenate reductase [Mesorhizobium loti]	146.0	[0..3]	[118..1]
gi\|69933848, gi\|... - gi\|69933848\|ref\|ZP_00628984.1\| Arsenate reductase [Paracoccus denitrificans PD1222], gi\|69154195\|gb\|...	146.0	[0..3]	[118..177]
gi\|91223516, gi\|... - gi\|91223516\|ref\|ZP_01258781.1\| arsenate reductase [Vibrio alginolyticus 12G01], gi\|91191602\|gb\|EAS77...	146.0	[0..3]	[118..1]
gi\|28807272 - gi\|28807272\|dbj\|BAC60542.1\| arsenate reductase [Vibrio parahaemolyticus RIMD 2210633] gi\|153836983, gi... - gi\|153836983\|ref\|ZP_01989650.1\| arsenate reductase [Vibrio parahaemolyticus AQ3810], gi\|149749756\|gb... gi\|28807272, gi\|... - gi\|28899053\|ref\|NP_798658.1\| arsenate reductase [Vibrio parahaemolyticus RIMD 2210633], gi\|28807272\|...	146.0	[0..3]	[118..1]
gi\|50120197, gi\|... - gi\|50120197\|ref\|YP_049364.1\| putative arsenate reductase [Pectobacterium atrosepticum SCRI1043], gi\|...	146.0	[0..3]	[118..8]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQVKIYHN PRCSKSRETL NLLKENGVEP EVVLYLETPA DAATLRDLLK ILGMNSAREL  60
   61 MRQKEDLYKE LNLADSSLSE EALIQAMVDN PKLMERPIVV ANGKARIGRP PEQVLEIVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1jzwA
Description:	Arsenate reductase ArsC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	0.92550006805966	bayes_pls_golite062009
peroxidase activity	0.62384958394125	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.62384958394125	bayes_pls_golite062009
catalytic activity	0.276204095462236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: