YRC Public Data Repository - Protein Structure Prediction

Protein:	YFGB_ECOLI
Organism:	Escherichia coli
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFGB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83570737, gi\|... - gi\|83570737\|ref\|ZP_00922180.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Shigella dysenteriae 10...	449.0	[0..1]	[384..1]
RLMN_ECOHS - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O9:H4 (strain HS) GN=rlmN PE=3 SV=1	447.0	[0..1]	[384..1]
RLMN_ECOL6 - Ribosomal RNA large subunit methyltransferase N OS=Escherichia coli O6 GN=rlmN PE=3 SV=1 RLMN_ECOL6 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|227835902, gi... - gi\|227887552\|ref\|ZP_04005357.1\| Fe-S-cluster oxidoreductase [Escherichia coli 83972], gi\|227835902\|g...	447.0	[0..1]	[384..1]
gi\|193068396, gi... - gi\|75237737\|ref\|ZP_00721753.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli E11001...	446.0	[0..1]	[384..1]
gi\|13362849, gi\|... - gi\|15832633\|ref\|NP_311406.1\| hypothetical protein ECs3379 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208820776, gi... - gi\|208820776\|ref\|ZP_03261096.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042... RLMN_ECO5E - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rl... gi\|217327135, gi... - gi\|217327135\|ref\|ZP_03443218.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW1458... gi\|189378598, gi... - gi\|189378598\|gb\|EDU97014.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508], gi... gi\|195936659 - gi\|195936659\|ref\|ZP_03082041.1\| hypothetical protein EscherichcoliO157_09385 [Escherichia coli O157:... gi\|208728432, gi... - gi\|208808631\|ref\|ZP_03250968.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206... gi\|208735657, gi... - gi\|208814380\|ref\|ZP_03255709.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045... gi\|168768609, gi... - gi\|189362276\|gb\|EDU80695.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486], g... gi\|168773569, gi... - gi\|187770632\|gb\|EDU34476.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196], g... gi\|189003147, gi... - gi\|189003147\|gb\|EDU72133.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076], g... gi\|168787863, gi... - gi\|189372335\|gb\|EDU90751.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869], gi... gi\|168748424, gi... - gi\|188017093\|gb\|EDU55215.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113], g... gi\|189356574, gi... - gi\|189356574\|gb\|EDU74993.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401], g... gi\|189368421, gi... - gi\|189368421\|gb\|EDU86837.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501], g... gi\|209763364, gi... - pir\|\|C91051 hypothetical protein ECs3379 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254593863, gi... - gi\|254794463\|ref\|YP_003079300.1\| predicted enzyme [Escherichia coli O157:H7 str. TW14359], gi\|254593... RLMN_ECO57 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O157:H7 GN=rlmN PE=3 SV=3	446.0	[0..1]	[384..1]
gi\|24113846, gi\|... - gi\|24113846\|ref\|NP_708356.1\| hypothetical protein SF2563 [Shigella flexneri 2a str. 301], gi\|2405293... gi\|30063909, gi\|... - gi\|30063909\|ref\|NP_838080.1\| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T], gi\|300421... RLMN_SHIFL - Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri GN=rlmN PE=3 SV=1 RLMN_SHIF8 - Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri serotype 5b (strain 8401) GN=rlmN P...	444.0	[0..1]	[384..1]
gi\|15803040, gi\|... - gi\|15803040\|ref\|NP_289070.1\| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933], gi\|125169... gi\|25320177 - pir\|\|G85895 hypothetical protein yfgB [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	442.0	[0..1]	[384..1]
lcl\|NC_016856.1_... - [gene=yfgB] [protein=hypothetical protein] [protein_id=YP_005238624.1] [location=complement(2710249.... gi\|205329931, gi... - gi\|205329931\|gb\|EDZ16695.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... RLMN_SALTY - Ribosomal RNA large subunit methyltransferase N OS=Salmonella typhimurium GN=rlmN PE=3 SV=1 gi\|197241296, gi... - gi\|197263041\|ref\|ZP_03163115.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica ... RLMN_SALTY - Dual-specificity RNA methyltransferase RlmN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... RLMN_SALTY - Ribosomal RNA large subunit methyltransferase N OS=Salmonella typhimurium GN=rlmN PE=3 SV=1	433.0	[0..1]	[384..1]
gi\|238713771, gi... - gi\|77957194\|ref\|ZP_00821256.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia bercovieri ATC...	432.0	[0..2]	[384..16]
RLMN_SALPA - Ribosomal RNA large subunit methyltransferase N OS=Salmonella paratyphi A GN=rlmN PE=3 SV=1 RLMN_SALCH - Ribosomal RNA large subunit methyltransferase N OS=Salmonella choleraesuis GN=rlmN PE=3 SV=1 RLMN_SALCH - Ribosomal RNA large subunit methyltransferase N OS=Salmonella choleraesuis GN=rlmN PE=3 SV=1 RLMN_SALTI - Ribosomal RNA large subunit methyltransferase N OS=Salmonella typhi GN=rlmN PE=3 SV=1 RLMN_SALPB - Ribosomal RNA large subunit methyltransferase N OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RLMN_SALHS - Dual-specificity RNA methyltransferase RlmN OS=Salmonella heidelberg (strain SL476) GN=rlmN PE=3 SV=... RLMN_SALCH - Dual-specificity RNA methyltransferase RlmN OS=Salmonella choleraesuis (strain SC-B67) GN=rlmN PE=3 ... RLMN_SALNS - Dual-specificity RNA methyltransferase RlmN OS=Salmonella newport (strain SL254) GN=rlmN PE=3 SV=1 RLMN_SALPA - Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN... RLMN_SALSV - Dual-specificity RNA methyltransferase RlmN OS=Salmonella schwarzengrund (strain CVM19633) GN=rlmN P... gi\|194455790, gi... - gi\|194469426\|ref\|ZP_03075410.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica ... gi\|168261436, gi... - gi\|205349318\|gb\|EDZ35949.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... gi\|205337567, gi... - gi\|205337567\|gb\|EDZ24331.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... gi\|168821500, gi... - gi\|205342014\|gb\|EDZ28778.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... gi\|168466724, gi... - gi\|195630780\|gb\|EDX49372.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... gi\|167549454, gi... - gi\|205325472\|gb\|EDZ13311.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... gi\|168238262, gi... - gi\|197288805\|gb\|EDY28178.1\| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enter... gi\|168232093, gi... - gi\|205333531\|gb\|EDZ20295.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... RLMN_SALPB - Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) ... gi\|16761440 - gi\|16761440\|ref\|NP_457057.1\| hypothetical protein STY2770 [Salmonella enterica subsp. enterica serov... gi\|213857325 - gi\|213857325\|ref\|ZP_03384296.1\| hypothetical protein SentesT_19305 [Salmonella enterica subsp. enter... gi\|213649661 - gi\|213649661\|ref\|ZP_03379714.1\| hypothetical protein SentesTy_21620 [Salmonella enterica subsp. ente... RLMN_SALTI - Dual-specificity RNA methyltransferase RlmN OS=Salmonella typhi GN=rlmN PE=3 SV=1 RLMN_SALPC - Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi C (strain RKS4594) GN=rlmN PE=3 ... gi\|29136488, gi\|... - gi\|29140863\|ref\|NP_804205.1\| hypothetical protein t0331 [Salmonella enterica subsp. enterica serovar... gi\|214000621 - gi\|214000621\|ref\|ZP_03411356.1\| hypothetical protein Salmonellentericaenterica_08483 [Salmonella ent... RLMN_SALEP - Dual-specificity RNA methyltransferase RlmN OS=Salmonella enteritidis PT4 (strain P125109) GN=rlmN P... RLMN_SALG2 - Dual-specificity RNA methyltransferase RlmN OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN... gi\|213425329 - gi\|213425329\|ref\|ZP_03358079.1\| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp. e... gi\|213161946 - gi\|213161946\|ref\|ZP_03347656.1\| hypothetical protein Salmoneentericaenterica_18887 [Salmonella enter... RLMN_SALDC - Dual-specificity RNA methyltransferase RlmN OS=Salmonella dublin (strain CT_02021853) GN=rlmN PE=3 S... RLMN_SALPK - Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi A (strain AKU_12601) GN=rlmN PE=... gi\|204321192, gi... - gi\|204929473\|ref\|ZP_03220547.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica ... gi\|200388216, gi... - gi\|200388216\|ref\|ZP_03214828.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica ...	431.0	[0..1]	[384..1]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLVTPEN VTTKDGKINL LDLNRQQMRE FFKDLGEKPF RADQVMKWMY HYCCDNFDEM  60
   61 TDINKVLRGK LKEVAEIRAP EVVEEQRSSD GTIKWAIAVG D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.483	0.824	iron ion binding	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #2

Region A:
Residues: [102-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRVETVYIPE DDRATLCVSS QVGCALECKF CSTAQQGFNR NLRVSEIIGQ VWRAAKIVGA  60
   61 AKVTGQRPIT NVVMMGMGEP LLNLNNVVPA MEIMLDDFGF GLSKRRVTLS TSGVVPALDK 120
  121 LGDMIDVALA ISLHAPNDEI RDEIVPINKK YNIETFLAAV RRYLEKSNAN QGRVTIEYVM 180
  181 LDHVNDGTEH AHQLAELLKD TPCKINLIPW NPFPGAPYGR SSNSRIDRFS KVLMSYGFTT 240
  241 IVRKTRGDDI DAACGQLAGD VIDRTKRTLR KRMQGEAIDI KAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	2qgqA
Description:	No description for 2qgqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits