YRC Public Data Repository - Protein Structure Prediction

Protein:	YFDS_ECOLI
Organism:	Escherichia coli
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFDS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83587142 - gi\|83587142\|ref\|ZP_00925771.1\| hypothetical protein Ecol1_01001529 [Escherichia coli 101-1]	229.0	[0..1]	[120..1]
gi\|75208111 - gi\|75208111\|ref\|ZP_00708503.1\| hypothetical protein EcolB_01004599 [Escherichia coli B171]	229.0	[0..1]	[120..1]
gi\|218368322, gi... - gi\|218561553\|ref\|YP_002394466.1\| conserved hypothetical protein; CPS-53 (KpLE1) prophage [Escherichi... gi\|75236057 - gi\|75236057\|ref\|ZP_00720183.1\| hypothetical protein EcolF_01004377 [Escherichia coli F11] gi\|117626690, gi... - gi\|117626690\|ref\|YP_860013.1\| hypothetical protein APECO1_2049 [Escherichia coli APEC O1], gi\|115515...	227.0	[0..1]	[120..1]
gi\|91214035, gi\|... - gi\|91214035\|ref\|YP_544021.1\| hypothetical protein UTI89_C5090 [Escherichia coli UTI89], gi\|91075609\|...	227.0	[0..1]	[120..1]
gi\|218547969, gi... - gi\|218547969\|ref\|YP_002381760.1\| conserved hypothetical protein; CPS-53 (KpLE1) prophage [Escherichi... gi\|19549016, gi\|... - gi\|19549016\|ref\|NP_599061.1\| hypothetical protein SfVp29 [Enterobacteria phage SfV], gi\|19483760\|gb\|...	227.0	[0..1]	[120..1]
gi\|75258751 - gi\|75258751\|ref\|ZP_00730141.1\| hypothetical protein EcolE2_01001371 [Escherichia coli E22]	224.0	[0..1]	[120..1]
gi\|24111741, gi\|... - gi\|24111741\|ref\|NP_706251.1\| hypothetical protein SF0299 [Shigella flexneri 2a str. 301], gi\|2405052...	189.0	[0..22]	[120..27]
gi\|9634184, gi\|6... - gi\|9634184\|ref\|NP_037722.1\| Gp37 [Enterobacteria phage HK97], gi\|6901613\|gb\|AAF31116.1\| Gp37 [Bacter...	107.0	[0..2]	[77..3]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMNVFEMEG FLRGKCVPRD LKVNETNAEY LVRKFDALEA KCAALENKII PVSAELPPAN  60
   61 ESVLLFDANG EGWLIGWRSL WYTWGQKETG EWQWTFQVGD LENVNITHWA VMPKAPEAGA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.578	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.578	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.549	a.216.1	Description not found.
View	Download	0.538	d.110.4	SNARE-like
View	Download	0.529	a.24.22	Description not found.
View	Download	0.529	f.14.1	Voltage-gated potassium channels
View	Download	0.529	f.14.1	Voltage-gated potassium channels
View	Download	0.521	d.110.4	SNARE-like
View	Download	0.496	a.118.1	ARM repeat
View	Download	0.490	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.479	d.110.4	SNARE-like
View	Download	0.352	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.299	d.188.1	Prokaryotic ribosomal protein L17
View	Download	0.295	a.73.1	Retrovirus capsid protein, N-terminal core domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits