YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBW_ECOLI
Organism:	Escherichia coli
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|40739493, gi\|... - gi\|67540258\|ref\|XP_663903.1\| hypothetical protein AN6299.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	112.0	[0..1]	[109..22]
gi\|134089961, gi... - gi\|50257184\|gb\|EAL19897.1\| hypothetical protein CNBG0400 [Cryptococcus neoformans var. neoformans B-...	112.0	[0..2]	[109..37]
gi\|57228337, gi\|... - gi\|58269890\|ref\|XP_572101.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g...	112.0	[0..2]	[109..37]
gi\|119193086, gi... - gi\|90305935\|gb\|EAS35566.1\| hypothetical protein CIMG_00920 [Coccidioides immitis RS], gi\|119193086\|r...	111.0	[0..2]	[108..33]
gi\|38111495, gi\|... - gi\|39945832\|ref\|XP_362453.1\| hypothetical protein MG08036.4 [Magnaporthe grisea 70-15], gb\|EAA57067....	108.0	[0..2]	[108..37]
gi\|169784024 - gi\|169784024\|ref\|XP_001826474.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238493861, gi... - gi\|238493861\|ref\|XP_002378167.1\| DUF803 domain membrane protein [Aspergillus flavus NRRL3357], gi\|22... gi\|83775218 - gi\|83775218\|dbj\|BAE65341.1\| unnamed protein product [Aspergillus oryzae]	108.0	[0..1]	[108..23]
gi\|85083018 - gi\|85083018\|ref\|XP_957026.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28918110, gi\|... - gi\|40882162\|emb\|CAF05988.1\| conserved hypothetical protein [Neurospora crassa], gi\|32406394\|ref\|XP_3...	107.0	[0..1]	[109..35]
gi\|111068729 - gi\|111068729\|gb\|EAT89849.1\| hypothetical protein SNOG_03118 [Phaeosphaeria nodorum SN15]	105.0	[0..1]	[108..35]
gi\|88180157, gi\|... - gi\|88180157\|gb\|EAQ87625.1\| hypothetical protein CHGG_04244 [Chaetomium globosum CBS 148.51], gi\|1161...	105.0	[0..1]	[108..35]
gi\|114188122, gi... - gi\|115442892\|ref\|XP_001218253.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	105.0	[0..1]	[108..19]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWLTLVFAS LLSVAGQLCQ KQATCFVAIN KRRKHIVLWL GLALACLGLA MVLWLLVLQN  60
   61 VPVGIAYPML SLNFVWVTLA AVKLWHEPVS PRHWCGVAFI IGGIVILGST V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits