YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBV_ECOLI
Organism:	Escherichia coli
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBV_ECOLI.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=STM14_2879] [protein=hypothetical protein] [protein_id=YP_005238414.1] [location=complement(24... gi\|205335819, gi... - gi\|205335819\|gb\|EDZ22583.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|167994686, gi... - gi\|205327507\|gb\|EDZ14271.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|167549662, gi... - gi\|205325228\|gb\|EDZ13067.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... YFBV_SALTY - UPF0208 membrane protein yfbV OS=Salmonella typhimurium GN=yfbV PE=3 SV=1 YFBV_SALPA - UPF0208 membrane protein yfbV OS=Salmonella paratyphi A GN=yfbV PE=3 SV=1 YFBV_SALPB - UPF0208 membrane protein YfbV OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfbV PE=3 S... YFBV_SALPK - UPF0208 membrane protein YfbV OS=Salmonella paratyphi A (strain AKU_12601) GN=yfbV PE=3 SV=1 gi\|197241649, gi... - gi\|197263394\|ref\|ZP_03163468.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALA4 - UPF0208 membrane protein YfbV OS=Salmonella agona (strain SL483) GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein yfbV OS=Salmonella choleraesuis GN=yfbV PE=3 SV=1 YFBV_SALSV - UPF0208 membrane protein YfbV OS=Salmonella schwarzengrund (strain CVM19633) GN=yfbV PE=3 SV=1 YFBV_SALPB - UPF0208 membrane protein yfbV OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfbV PE=3 S... YFBV_SALG2 - UPF0208 membrane protein YfbV OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfbV PE=3 SV=... gi\|204929018, gi... - gi\|204929018\|ref\|ZP_03220161.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... gi\|200388557, gi... - gi\|200388557\|ref\|ZP_03215169.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALDC - UPF0208 membrane protein YfbV OS=Salmonella dublin (strain CT_02021853) GN=yfbV PE=3 SV=1 gi\|195631339, gi... - gi\|195631339\|gb\|EDX49899.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|168261645, gi... - gi\|205349627\|gb\|EDZ36258.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|205338437, gi... - gi\|205338437\|gb\|EDZ25201.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|197289671, gi... - gi\|197289671\|gb\|EDY29034.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|194468791, gi... - gi\|194468791\|ref\|ZP_03074775.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALHS - UPF0208 membrane protein YfbV OS=Salmonella heidelberg (strain SL476) GN=yfbV PE=3 SV=1 YFBV_SALNS - UPF0208 membrane protein YfbV OS=Salmonella newport (strain SL254) GN=yfbV PE=3 SV=1 gi\|205345072, gi... - gi\|205345072\|gb\|EDZ31836.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... YFBV_SALTY - UPF0208 membrane protein YfbV OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfb... YFBV_SALPC - UPF0208 membrane protein YfbV OS=Salmonella paratyphi C (strain RKS4594) GN=yfbV PE=3 SV=1 YFBV_SALEP - UPF0208 membrane protein YfbV OS=Salmonella enteritidis PT4 (strain P125109) GN=yfbV PE=3 SV=1 YFBV_SALTY - UPF0208 membrane protein yfbV OS=Salmonella typhimurium GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein yfbV OS=Salmonella choleraesuis GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein YfbV OS=Salmonella choleraesuis (strain SC-B67) GN=yfbV PE=3 SV=1 YFBV_SALPA - UPF0208 membrane protein YfbV OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfbV PE=3 SV=...	254.0	[0..1]	[151..1]
YFBV_ECOL6 - UPF0208 membrane protein YfbV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfbV... gi\|227887353, gi... - gi\|227887353\|ref\|ZP_04005158.1\| conserved inner membrane protein [Escherichia coli 83972], gi\|227835... YFBV_ECOL6 - UPF0208 membrane protein yfbV OS=Escherichia coli O6 GN=yfbV PE=3 SV=1	253.0	[0..1]	[151..1]
YFBV_SALTI - UPF0208 membrane protein yfbV OS=Salmonella typhi GN=yfbV PE=3 SV=1 YFBV_SALTI - UPF0208 membrane protein YfbV OS=Salmonella typhi GN=yfbV PE=3 SV=1 gi\|29141043, gi\|... - gi\|29141043\|ref\|NP_804385.1\| hypothetical protein t0528 [Salmonella enterica subsp. enterica serovar... gi\|213586363 - gi\|213586363\|ref\|ZP_03368189.1\| hypothetical protein SentesTyph_35848 [Salmonella enterica subsp. en... gi\|213647243 - gi\|213647243\|ref\|ZP_03377296.1\| hypothetical protein SentesTy_08030 [Salmonella enterica subsp. ente... gi\|16761261 - gi\|16761261\|ref\|NP_456878.1\| hypothetical protein STY2566 [Salmonella enterica subsp. enterica serov... gi\|213855349 - gi\|213855349\|ref\|ZP_03383589.1\| hypothetical protein SentesT_15292 [Salmonella enterica subsp. enter... gi\|214002010 - gi\|214002010\|ref\|ZP_03412745.1\| hypothetical protein Salmonellentericaenterica_17012 [Salmonella ent... gi\|213026938 - gi\|213026938\|ref\|ZP_03341385.1\| hypothetical protein Salmonelentericaenterica_32675 [Salmonella ente... gi\|213052861 - gi\|213052861\|ref\|ZP_03345739.1\| hypothetical protein Salmoneentericaenterica_08058 [Salmonella enter... gi\|213423576 - gi\|213423576\|ref\|ZP_03356556.1\| hypothetical protein Salmonentericaenterica_39446 [Salmonella enteri... gi\|213427005 - gi\|213427005\|ref\|ZP_03359755.1\| hypothetical protein SentesTyphi_16180 [Salmonella enterica subsp. e...	253.0	[0..1]	[151..1]
gi\|15802842, gi\|... - gi\|15802842\|ref\|NP_288869.1\| hypothetical protein Z3556 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|25303113 - gi\|25303113\|pir\|\|D85870 hypothetical protein Z3556 [imported] - Escherichia coli (strain O157:H7, s...	251.0	[0..1]	[151..1]
YFBV_SHIF8 - UPF0208 membrane protein YfbV OS=Shigella flexneri serotype 5b (strain 8401) GN=yfbV PE=3 SV=1 YFBV_SHIFL - UPF0208 membrane protein YfbV OS=Shigella flexneri GN=yfbV PE=3 SV=1 gi\|30063721, gi\|... - gi\|30063721\|ref\|NP_837892.1\| hypothetical protein S2506 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24052732, gi\|... - gi\|24113667\|ref\|NP_708177.1\| hypothetical protein SF2371 [Shigella flexneri 2a str. 301], gi\|2405273...	251.0	[0..1]	[151..1]
YFBV_ECOK1 - UPF0208 membrane protein YfbV OS=Escherichia coli O1:K1 / APEC GN=yfbV PE=3 SV=1 YFBV_ECO45 - UPF0208 membrane protein YfbV OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfbV PE=3 SV=1 YFBV_ECOUT - UPF0208 membrane protein YfbV OS=Escherichia coli (strain UTI89 / UPEC) GN=yfbV PE=3 SV=1 gi\|237704771, gi... - gi\|237704771\|ref\|ZP_04535252.1\| membrane protein yfbV [Escherichia sp. 3_2_53FAA], gi\|226901137\|gb\|E...	250.0	[0..1]	[151..1]
gi\|238785674, gi... - gi\|77956854\|ref\|ZP_00820929.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia berc...	248.0	[0..1]	[151..1]
gi\|238799410, gi... - gi\|77960596\|ref\|ZP_00824460.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia moll...	246.0	[0..1]	[151..1]
gi\|238788664, gi... - gi\|77975487\|ref\|ZP_00831022.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia fred...	245.0	[0..1]	[151..1]
Y2595_YERPS - UPF0208 membrane protein YPTB2595 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB... Y2690_YERPB - UPF0208 membrane protein YPTS_2690 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS... Y1552_YERPY - UPF0208 membrane protein YPK_1552 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_... Y2595_YERPS - UPF0208 membrane protein YPTB2595 OS=Yersinia pseudotuberculosis GN=YPTB2595 PE=3 SV=1 Y1444_YERP3 - UPF0208 membrane protein YpsIP31758_1444 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 317...	242.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPDNRSVN FFSLFRRGQH YSKTWPLEKR LAPVFVENRV IKMTRYAIRF MPPIAVFTLC  60
   61 WQIALGGQLG PAVATALFAL SLPMQGLWWL GKRSVTPLPP AILNWFYEVR GKLQESGQVL 120
  121 APVEGKPDYQ ALADTLKRAF KQLDKTFLDD L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	111.119186
Match:	PF04217.4
Description:	No description for PF04217.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits