YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBM_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|117624464, gi... - gi\|117624464\|ref\|YP_853377.1\| hypothetical protein APECO1_4290 [Escherichia coli APEC O1], gi\|115513... gi\|91073141, gi\|... - gi\|91211567\|ref\|YP_541553.1\| hypothetical protein UTI89_C2555 [Escherichia coli UTI89], gi\|91073141\|... gi\|218559188, gi... - gi\|218559188\|ref\|YP_002392101.1\| hypothetical protein ECS88_2422 [Escherichia coli S88], gi\|21836595... gi\|215265560, gi... - gi\|215487488\|ref\|YP_002329919.1\| hypothetical protein E2348C_2415 [Escherichia coli O127:H6 str. E23... gi\|218690435, gi... - gi\|218690435\|ref\|YP_002398647.1\| hypothetical protein ECED1_2739 [Escherichia coli ED1a], gi\|2184279... gi\|26109067, gi\|... - gi\|26248662\|ref\|NP_754702.1\| hypothetical protein c2816 [Escherichia coli CFT073], gi\|26109067\|gb\|AA... gi\|190909500, gi... - gi\|75243086\|ref\|ZP_00726792.1\| hypothetical protein EcolF_01000309 [Escherichia coli F11], gi\|191169... gi\|110642479, gi... - gi\|110642479\|ref\|YP_670209.1\| hypothetical protein ECP_2314 [Escherichia coli 536], gi\|110344071\|gb\|... gi\|227887331, gi... - gi\|227887331\|ref\|ZP_04005136.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783568... gi\|226901115, gi... - gi\|237704749\|ref\|ZP_04535230.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	222.0	[0..1]	[167..1]
gi\|253978350, gi... - gi\|254289043\|ref\|YP_003054791.1\| hypothetical protein ECD_02198 [Escherichia coli BL21(DE3)], gi\|253... gi\|242377906, gi... - gi\|251785633\|ref\|YP_002999937.1\| hypothetical protein B21_02158 [Escherichia coli BL21], gi\|24237790... gi\|254162282, gi... - gi\|254162282\|ref\|YP_003045390.1\| hypothetical protein ECB_02198 [Escherichia coli B str. REL606], gi... gi\|124501911, gi... - gi\|124526440\|ref\|ZP_01698393.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501911\|gb... gi\|169754344, gi... - gi\|170019416\|ref\|YP_001724370.1\| hypothetical protein EcolC_1377 [Escherichia coli ATCC 8739], gi\|16... gi\|83588256 - gi\|83588256\|ref\|ZP_00926881.1\| hypothetical protein Ecol1_01000642 [Escherichia coli 101-1] gi\|75238058 - gi\|75238058\|ref\|ZP_00722063.1\| hypothetical protein EcolE1_01001279 [Escherichia coli E110019] gi\|218352606, gi... - gi\|218695874\|ref\|YP_002403541.1\| hypothetical protein EC55989_2519 [Escherichia coli 55989], gi\|2183... gi\|82777683, gi\|... - gi\|82777683\|ref\|YP_404032.1\| hypothetical protein SDY_2471 [Shigella dysenteriae Sd197], gi\|81241831... gi\|209912982, gi... - gi\|209919723\|ref\|YP_002293807.1\| hypothetical protein ECSE_2532 [Escherichia coli SE11], gi\|20991298... gi\|75230344 - gi\|75230344\|ref\|ZP_00716834.1\| hypothetical protein EcolB7_01001455 [Escherichia coli B7A] gi\|218554831, gi... - gi\|218554831\|ref\|YP_002387744.1\| hypothetical protein ECIAI1_2349 [Escherichia coli IAI1], gi\|218361...	221.0	[0..1]	[167..1]
gi\|208813041, gi... - gi\|208813041\|ref\|ZP_03254370.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208819819, gi... - gi\|208819819\|ref\|ZP_03260139.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209161397, gi... - gi\|209399997\|ref\|YP_002271684.1\| hypothetical protein ECH74115_3414 [Escherichia coli O157:H7 str. E... gi\|217319724, gi... - gi\|217327357\|ref\|ZP_03443440.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189372797, gi... - gi\|189372797\|gb\|EDU91213.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189378908, gi... - gi\|189378908\|gb\|EDU97324.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|195935652 - gi\|195935652\|ref\|ZP_03081034.1\| hypothetical protein EscherichcoliO157_04197 [Escherichia coli O157:... gi\|208726172, gi... - gi\|208806371\|ref\|ZP_03248708.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|189368276, gi... - gi\|189368276\|gb\|EDU86692.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168767901, gi... - gi\|189362997\|gb\|EDU81416.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|254794167, gi... - gi\|254794167\|ref\|YP_003079004.1\| hypothetical protein ECSP_3149 [Escherichia coli O157:H7 str. TW143... gi\|168772999, gi... - gi\|187771217\|gb\|EDU35061.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189001970, gi... - gi\|189001970\|gb\|EDU70956.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|209765202, gi... - pir\|\|H85867 hypothetical protein yfbM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13362629, gi\|... - gi\|15832413\|ref\|NP_311186.1\| hypothetical protein ECs3159 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017346, gi... - gi\|188017346\|gb\|EDU55468.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168755027, gi... - gi\|189357639\|gb\|EDU76058.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|12516622, gi\|... - gi\|15802822\|ref\|NP_288849.1\| hypothetical protein Z3533 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|13362629, gi\|... - gi\|15832413\|ref\|NP_311186.1\| hypothetical protein ECs3159 [Escherichia coli O157:H7], gi\|13362629\|db...	221.0	[0..1]	[167..1]
gi\|75259733, gi\|... - gi\|75259733\|ref\|ZP_00731035.1\| hypothetical protein EcolE2_01000650 [Escherichia coli E22], gi\|19306... gi\|157155210, gi... - gi\|75187057\|ref\|ZP_00700324.1\| hypothetical protein EcolE_01000283 [Escherichia coli E24377A], gi\|15...	220.0	[0..1]	[167..1]
gi\|194427091, gi... - gi\|75211678\|ref\|ZP_00711757.1\| hypothetical protein EcolB_01001378 [Escherichia coli B171], gi\|19442...	220.0	[0..1]	[167..1]
gi\|75177937, gi\|... - gi\|75177937\|ref\|ZP_00697999.1\| hypothetical protein SboyB_01002142 [Shigella boydii BS512], gi\|18773...	220.0	[0..1]	[166..1]
gi\|73856270, gi\|... - gi\|74312793\|ref\|YP_311212.1\| hypothetical protein SSON_2332 [Shigella sonnei Ss046], gi\|73856270\|gb\|...	189.0	[0..1]	[145..1]
gi\|110615786, gi... - gi\|110806238\|ref\|YP_689758.1\| hypothetical protein SFV_2342 [Shigella flexneri 5 str. 8401], gi\|1106...	184.0	[0..26]	[167..1]
gi\|75512747 - gi\|75512747\|ref\|ZP_00735249.1\| hypothetical protein Ecol5_01003139 [Escherichia coli 53638]	179.0	[0..1]	[134..1]
gi\|126700782, gi... - gi\|126700782\|ref\|YP_001089679.1\| hypothetical protein CD3163 [Clostridium difficile 630], gi\|1152522...	169.0	[0..1]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMIGYFAEI DSEKINQLLE STEKPLMDNI HDTLSGLRRL DIDKRWDFLH FGLTGTSAFD  60
   61 PAKNDPLSRA VLGEHSLEDG IDGFLGLTWN QELAATIDRL ESLDRNELRK QFSIKRLNEM 120
  121 EIYPGVTFSE ELEGQLFASI MLDMEKLISA YRRMLRQGNH ALTVIVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.09691
Match:	1rylA
Description:	Structural Genomics,the crystal structure of a hypothetical protein yfbM from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits