YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBJ_ECOLI
Organism:	Escherichia coli
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|225615812, gi... - gi\|225629316\|ref\|ZP_03787349.1\| transporter, DME family protein [Brucella ceti str. Cudo], gi\|225615... gi\|237816873, gi... - gi\|237816873\|ref\|ZP_04595865.1\| transporter, DME family [Brucella abortus str. 2308 A], gi\|237787686... gi\|148369695, gi... - gi\|148558410\|ref\|YP_001257789.1\| hypothetical protein BOV_A0801 [Brucella ovis ATCC 25840], gi\|14836... gi\|25526060 - pir\|\|AF3564 transporter, dme family BMEII0439 [imported] - Brucella melitensis (strain 16M) gi\|17988784, gi\|... - gi\|17988784\|ref\|NP_541417.1\| transporter, DME family [Brucella melitensis 16M], gi\|17984601\|gb\|AAL53...	105.0	[0..3]	[124..24]
gi\|77975268 - gi\|77975268\|ref\|ZP_00830804.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	102.0	[0..2]	[126..3]
gi\|14022068, gi\|... - gi\|14022068\|dbj\|BAB48678.1\| mll1264 [Mesorhizobium loti MAFF303099], gi\|13471323\|ref\|NP_102892.1\| hy...	100.0	[0..3]	[126..9]
gi\|81241815, gi\|... - gi\|82777667\|ref\|YP_404016.1\| putative transport/receptor protein [Shigella dysenteriae Sd197], gi\|81...	97.0	[0..1]	[128..95]
gi\|53795077 - ref\|ZP_00356179.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily [Chlorofl... gi\|76167083, gi\|... - gi\|76257997\|ref\|ZP_00765654.1\| transporter, DME family [Chloroflexus aurantiacus J-10-fl], gi\|761670...	97.0	[0..2]	[122..34]
gi\|49176203, gi\|... - gi\|49176203\|ref\|NP_416761.3\| hypothetical protein b2258 [Escherichia coli K12], gb\|AAC75318.1\| putat... gi\|7460138 - gi\|7460138\|pir\|\|H64996 hypothetical protein b2258 - Escherichia coli (strain K-12) gi\|73856257, gi\|... - gi\|74312780\|ref\|YP_311199.1\| putative transport/receptor protein [Shigella sonnei Ss046], gi\|7385625...	96.0	[0..1]	[128..95]
gi\|218365944, gi... - gi\|218559175\|ref\|YP_002392088.1\| hypothetical protein ECS88_2409 [Escherichia coli S88], gi\|21836594... gi\|91073127, gi\|... - gi\|91211553\|ref\|YP_541539.1\| hypothetical protein UTI89_C2541 [Escherichia coli UTI89], gi\|91073127\|... gi\|117624451, gi... - gi\|117624451\|ref\|YP_853364.1\| hypothetical protein APECO1_4303 [Escherichia coli APEC O1], gi\|115513...	96.0	[0..1]	[128..95]
gi\|22125816, gi\|... - gi\|22125816\|ref\|NP_669239.1\| hypothetical protein y1923 [Yersinia pestis KIM], gi\|21958743\|gb\|AAM854...	96.0	[0..2]	[125..21]
gi\|81246151, gi\|... - gi\|82544740\|ref\|YP_408687.1\| putative transport/receptor protein [Shigella boydii Sb227], gi\|8124615...	95.0	[0..1]	[128..95]
gi\|238716477, gi... - gi\|77959220\|ref\|ZP_00823242.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	95.0	[0..2]	[125..3]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLMWGLFSV IIASVAQLSL GFAASHLPPM THLWDFIAAL LAFGLDARIL LLGLLGYLLS  60
   61 VFCWYKTLHK LALSKAYALL SMSYVLVWIA SMVLPGWEGT FSLKALLGVA CIMSGLMLIF 120
  121 LPTTKQRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits