YRC Public Data Repository - Protein Structure Prediction

Protein:	YEGQ_ECOLI
Organism:	Escherichia coli
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEGQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24113463, gi\|... - ref\|NP_707973.1\| hypothetical protein SF2146 [Shigella flexneri 2a str. 301], gb\|AAN43680.1\| orf, c... gi\|110806051, gi... - gi\|110806051\|ref\|YP_689571.1\| hypothetical protein SFV_2142 [Shigella flexneri 5 str. 8401], gi\|1106...	616.0	[0..1]	[453..48]
gi\|238723728, gi... - gi\|77974644\|ref\|ZP_00830183.1\| COG0826: Collagenase and related proteases [Yersinia frederiksenii AT...	613.0	[0..4]	[453..5]
gi\|50122115, gi\|... - gi\|50122115\|ref\|YP_051282.1\| putative protease [Pectobacterium atrosepticum SCRI1043], gi\|49612641\|e...	612.0	[0..1]	[453..1]
gi\|189367830, gi... - gi\|189367830\|gb\|EDU86246.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4501], gi\|1687618... gi\|168757983, gi... - gi\|189355129\|gb\|EDU73548.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4401], gi\|1687579... gi\|168775467, gi... - gi\|187768961\|gb\|EDU32805.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4196], gi\|1687754... gi\|15832143, gi\|... - gi\|15832143\|ref\|NP_310916.1\| hypothetical protein ECs2889 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168769838, gi... - gi\|189361221\|gb\|EDU79640.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4486], gi\|1687698... gi\|168788754, gi... - gi\|189371572\|gb\|EDU89988.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC869], gi\|16878875... gi\|168782368, gi... - gi\|189000095\|gb\|EDU69081.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4076], gi\|1687823... gi\|170019592, gi... - gi\|170019592\|ref\|YP_001724546.1\| peptidase U32 [Escherichia coli ATCC 8739], gi\|169754520\|gb\|ACA7721... gi\|189378397, gi... - gi\|189378397\|gb\|EDU96813.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC508], gi\|16879903... gi\|25320717, gi\|... - pir\|\|D85835 hypothetical protein yegQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188015399, gi... - gi\|188015399\|gb\|EDU53521.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4113], gi\|1687504... gi\|208727840, gi... - gi\|208808039\|ref\|ZP_03250376.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195938275 - gi\|195938275\|ref\|ZP_03083657.1\| peptidase U32 [Escherichia coli O157:H7 str. EC4024] gi\|208819849, gi... - gi\|208819849\|ref\|ZP_03260169.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|208817127, gi... - gi\|208817127\|ref\|ZP_03258219.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|217317339, gi... - gi\|217329571\|ref\|ZP_03445650.1\| peptidase, U32 family [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|209396381, gi... - gi\|209396381\|ref\|YP_002271324.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|124501722, gi... - gi\|124526666\|ref\|ZP_01698575.1\| peptidase U32 [Escherichia coli B], gi\|124501722\|gb\|EAY49184.1\| pept... gi\|251785461, gi... - gi\|251785461\|ref\|YP_002999765.1\| hypothetical protein B21_01978 [Escherichia coli BL21], gi\|24237773... gi\|253978167, gi... - gi\|254288860\|ref\|YP_003054608.1\| predicted peptidase [Escherichia coli BL21(DE3)], gi\|253978167\|gb\|A... gi\|253973973, gi... - gi\|254162072\|ref\|YP_003045180.1\| predicted peptidase [Escherichia coli B str. REL606], gi\|253973973\|... gi\|254793866, gi... - gi\|254793866\|ref\|YP_003078703.1\| predicted peptidase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|15832143, gi\|... - gi\|15832143\|ref\|NP_310916.1\| hypothetical protein ECs2889 [Escherichia coli O157:H7], gi\|13362358\|db... gi\|26108864, gi\|... - gi\|26248459\|ref\|NP_754499.1\| putative protease yegQ [Escherichia coli CFT073], gi\|26108864\|gb\|AAN810... gi\|12516290, gi\|... - gi\|15802562\|ref\|NP_288589.1\| hypothetical protein Z3250 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|194431441, gi... - gi\|83571189\|ref\|ZP_00922630.1\| COG0826: Collagenase and related proteases [Shigella dysenteriae 1012... gi\|194436156, gi... - gi\|83588073\|ref\|ZP_00926698.1\| COG0826: Collagenase and related proteases [Escherichia coli 101-1], ... gi\|74312606, gi\|... - gi\|74312606\|ref\|YP_311025.1\| hypothetical protein SSON_2134 [Shigella sonnei Ss046], gi\|73856083\|gb\|... gi\|75196136 - gi\|75196136\|ref\|ZP_00706206.1\| COG0826: Collagenase and related proteases [Escherichia coli HS] gi\|188490879, gi... - gi\|75514113\|ref\|ZP_00736443.1\| COG0826: Collagenase and related proteases [Escherichia coli 53638], ...	611.0	[0..1]	[453..1]
gi\|30063526, gi\|... - gi\|30063526\|ref\|NP_837697.1\| hypothetical protein S2271 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|56480033, gi\|... - gi\|56480033\|ref\|NP_707973.2\| hypothetical protein SF2146 [Shigella flexneri 2a str. 301], gi\|5638358...	610.0	[0..1]	[453..1]
gi\|16765465, gi\|... - gi\|16765465\|ref\|NP_461080.1\| putative protease [Salmonella typhimurium LT2], gi\|16420670\|gb\|AAL21039... gi\|29136850, gi\|... - gi\|29141224\|ref\|NP_804566.1\| putative protease [Salmonella enterica subsp. enterica serovar Typhi st... gi\|25320728, gi\|... - gi\|25320728\|pir\|\|AE0774 probable protease STY2365 [imported] - Salmonella enterica subsp. enterica s... gi\|16761079 - gi\|16761079\|ref\|NP_456696.1\| putative protease [Salmonella enterica subsp. enterica serovar Typhi st... gi\|167991053, gi... - gi\|205330611\|gb\|EDZ17375.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|205324030, gi... - gi\|205324030\|gb\|EDZ11869.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Saint... gi\|161613180, gi... - gi\|161613180\|ref\|YP_001587145.1\| putative protease [Salmonella enterica subsp. enterica serovar Para... gi\|205351159, gi... - gi\|205351159\|gb\|EDZ37790.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Hadar... gi\|205338349, gi... - gi\|205338349\|gb\|EDZ25113.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Heide... gi\|197290631, gi... - gi\|197290631\|gb\|EDY29986.1\| peptidase, U32 family protein [Salmonella enterica subsp. enterica serov... gi\|168229482, gi... - gi\|205335759\|gb\|EDZ22523.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Kentu... gi\|213428260 - gi\|213428260\|ref\|ZP_03361010.1\| putative protease [Salmonella enterica subsp. enterica serovar Typhi... gi\|206709374, gi... - gi\|207857571\|ref\|YP_002244222.1\| putative protease [Salmonella enterica subsp. enterica serovar Ente... gi\|205273056, gi... - gi\|205353275\|ref\|YP_002227076.1\| putative protease [Salmonella enterica subsp. enterica serovar Gall... gi\|204321579, gi... - gi\|204929035\|ref\|ZP_03220178.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar J... lcl\|NC_016856.1_... - [gene=yegQ] [protein=putative protease] [protein_id=YP_005238174.1] [location=2281237..2282598] gi\|213999795 - gi\|213999795\|ref\|ZP_03410530.1\| putative protease [Salmonella enterica subsp. enterica serovar Typhi... gi\|213648527 - gi\|213648527\|ref\|ZP_03378580.1\| putative protease [Salmonella enterica subsp. enterica serovar Typhi... gi\|194468771, gi... - gi\|194468771\|ref\|ZP_03074755.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar K... gi\|194450792, gi... - gi\|194450792\|ref\|YP_002046187.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar ... gi\|168818163, gi... - gi\|205345022\|gb\|EDZ31786.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Welte... gi\|238912581 - gi\|238912581\|ref\|ZP_04656418.1\| putative protease [Salmonella enterica subsp. enterica serovar Tenne... gi\|168466194, gi... - gi\|195631501\|gb\|EDX50061.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar Newpo... gi\|200387914, gi... - gi\|200387914\|ref\|ZP_03214526.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar V... gi\|197242202, gi... - gi\|197263947\|ref\|ZP_03164021.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar S... gi\|197213682, gi... - gi\|197249979\|ref\|YP_002147107.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar ... gi\|194735950, gi... - gi\|194735950\|ref\|YP_002115226.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar ...	609.0	[0..1]	[453..1]
gi\|197093358, gi... - gi\|197361882\|ref\|YP_002141518.1\| putative protease [Salmonella enterica subsp. enterica serovar Para... gi\|56127208, gi\|... - gi\|56412951\|ref\|YP_150026.1\| putative protease [Salmonella enterica subsp. enterica serovar Paratyph...	609.0	[0..1]	[453..1]
gi\|237704542, gi... - gi\|237704542\|ref\|ZP_04535023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|215265376, gi... - gi\|215487304\|ref\|YP_002329735.1\| predicted peptidase [Escherichia coli O127:H6 str. E2348/69], gi\|21... gi\|218365734, gi... - gi\|218558965\|ref\|YP_002391878.1\| putative peptidase [Escherichia coli S88], gi\|218365734\|emb\|CAR0347... gi\|110642295, gi... - gi\|110642295\|ref\|YP_670025.1\| putative protease YegQ [Escherichia coli 536], gi\|110343887\|gb\|ABG7012... gi\|91211373, gi\|... - gi\|91211373\|ref\|YP_541359.1\| hypothetical protein UTI89_C2360 [Escherichia coli UTI89], gi\|91072947\|... gi\|190909730, gi... - gi\|75242906\|ref\|ZP_00726612.1\| COG0826: Collagenase and related proteases [Escherichia coli F11], gi... gi\|218427707, gi... - gi\|218690143\|ref\|YP_002398355.1\| putative peptidase [Escherichia coli ED1a], gi\|218427707\|emb\|CAR086... gi\|117624282, gi... - gi\|117624282\|ref\|YP_853195.1\| hypothetical protein APECO1_1176 [Escherichia coli APEC O1], gi\|115513...	609.0	[0..1]	[453..1]
gi\|238783825, gi... - gi\|77958950\|ref\|ZP_00822975.1\| COG0826: Collagenase and related proteases [Yersinia bercovieri ATCC ...	609.0	[0..4]	[453..14]
gi\|62128354, gi\|... - gi\|62180721\|ref\|YP_217138.1\| putative protease [Salmonella enterica subsp. enterica serovar Cholerae... gi\|198242901, gi... - gi\|198242901\|ref\|YP_002216222.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar ...	609.0	[0..1]	[453..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKPELLSPA GTLKNMRYAF AYGADAVYAG QPRYSLRVRN NEFNHENLQL GINEAHALGK  60
   61 KFYVVVNIAP HNAKLKTFIR DLKPVVEMGP DALIMSDPGL IMLVREHFPE MPIHLSVQAN 120
  121 AVNWATVKFW QQMGLTRVIL SRELSLEEIE EIRNQVPDME IEIFVHGALC MAY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.63
Match:	1u83A
Description:	PSL synthase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [174-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGRCLLSGYI NKRDPNQGTC TNACRWEYNV QEGKEDDVGN IVHKYEPIPV QNVEPTLGIG  60
   61 APTDKVFMIE EAQRPGEYMT AFEDEHGTYI MNSKDLRAIA HVERLTKMGV HSLKIEGRTK 120
  121 SFYYCARTAQ VYRKAIDDAA AGKPFDTSLL ETLEGLAHRG YTEGFLRRHT HDDYQNYE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.886057
Match:	PF01136.10
Description:	No description for PF01136.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [352-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYSVSDRQQ FVGEFTGERK GDLAAVAVKN KFSVGDSLEL MTPQGNINFT LEHMENAKGE  60
   61 AMPIAPGDGY TVWLPVPQDL ELNYALLMRN FSGETTRNPH GK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits