YRC Public Data Repository - Protein Structure Prediction

Protein:	YEFI_ECOLI
Organism:	Escherichia coli
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEFI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	270.0	[0..1]	[368..1]
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	269.0	[0..1]	[370..1]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	266.0	[0..1]	[371..1]
gi\|7433883 - pir\|\|F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus horikoshii gi\|3258282, gi\|1... - gi\|3258282\|dbj\|BAA30965.1\| 381aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591592\|...	264.0	[0..1]	[371..4]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	260.0	[0..1]	[372..1]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	256.0	[0..3]	[371..2]
gi\|42527539, gi\|... - gi\|42527539\|ref\|NP_972637.1\| glycosyl transferase, group 1 family protein [Treponema denticola ATCC ...	254.0	[0..1]	[371..1]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	253.0	[0..1]	[370..1]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	252.0	[0..1]	[372..1]
gi\|81168271, gi\|... - gi\|81299390\|ref\|YP_399598.1\| sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein [Synechoc... gi\|56750953, gi\|... - gi\|56750953\|ref\|YP_171654.1\| sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein [Synechoc...	252.0	[0..3]	[370..2]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSIVVVSA VNFTTGGPFT ILKKFLAATN NKENVSFIAL VHSAKELKES YPWVKFIEFP  60
   61 EVKGSWLKRL HFEYVVCKKL SKELNATHWI CLHDITANVV TKKRYVYCHN PAPFYKGILF 120
  121 REILMEPSFF LFKMLYGLIY KINIKKNTAV FVQQFWMKEK FIKKYSINNI IVSRPEIKLS 180
  181 DKSQLTDDDS QFKNNPSELT IFYPAVPRVF KNYELIISAA RKLKEQSNIK FLLTISGTEN 240
  241 AYAKYIISLA EGLDNVHFLG YLDKEKIDHC YNISDIVCFP SRLETWGLPL SEAKERGKWV 300
  301 LASDFPFTRE TLGSYEKKAF FDSNNDDMLV KLIIDFKKGN LKKDISDANF IYRNENVLVG 360
  361 FDELVNFITE EH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits