YRC Public Data Repository - Protein Structure Prediction

Protein:	YEEE_ECOLI
Organism:	Escherichia coli
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEEE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|251806618, gi... - gi\|251809845\|ref\|ZP_04824318.1\| protein of hypothetical function DUF395 YeeE/YedE [Staphylococcus ep... gi\|27468564, gi\|... - gi\|27468564\|ref\|NP_765201.1\| hypothetical protein SE1646 [Staphylococcus epidermidis ATCC 12228], gi...	246.0	[0..1]	[350..1]
gi\|14247818, gi\|... - gi\|15925035\|ref\|NP_372569.1\| hypothetical protein SAV2045 [Staphylococcus aureus subsp. aureus Mu50]...	246.0	[0..3]	[350..2]
gi\|21283698, gi\|... - gi\|21283698\|ref\|NP_646786.1\| hypothetical protein MW1969 [Staphylococcus aureus subsp. aureus MW2], ... gi\|49486840, gi\|... - gi\|49486840\|ref\|YP_044061.1\| hypothetical protein SAS1950 [Staphylococcus aureus subsp. aureus MSSA4... gi\|251801577, gi... - gi\|251814907\|ref\|ZP_04829380.1\| protein of hypothetical function DUF395 YeeE/YedE [Staphylococcus au...	245.0	[0..3]	[350..2]
gi\|13701839, gi\|... - gi\|15927620\|ref\|NP_375153.1\| hypothetical protein SA1850 [Staphylococcus aureus subsp. aureus N315],... gi\|253315084 - gi\|253315084\|ref\|ZP_04838297.1\| hypothetical protein SauraC_02718 [Staphylococcus aureus subsp. aure... gi\|25357355 - pir\|\|C89996 conserved hypothetical protein SA1850 [imported] - Staphylococcus aureus (strain N315) gi\|90584471, gi\|... - gi\|90584471\|ref\|ZP_01240198.1\| YeeE/YedE [Staphylococcus aureus subsp. aureus JH1], gi\|90426469\|gb\|E... gi\|269203679\|ref... - hypothetical protein SAAV_2093 [Staphylococcus aureus subsp. aureus ED98] gi\|148268497, gi... - gi\|148268497\|ref\|YP_001247440.1\| hypothetical protein SaurJH9_2082 [Staphylococcus aureus subsp. aur...	245.0	[0..3]	[350..2]
gi\|68446712, gi\|... - gi\|70725988\|ref\|YP_252902.1\| hypothetical protein SH0987 [Staphylococcus haemolyticus JCSC1435], gi\|...	244.0	[0..1]	[351..1]
gi\|221140269 - gi\|221140269\|ref\|ZP_03564762.1\| hypothetical protein SauraJ_01379 [Staphylococcus aureus subsp. aure... gi\|221137364 - gi\|221137364\|ref\|ZP_03562171.1\| hypothetical protein SauraJK_01771 [Staphylococcus aureus subsp. aur... gi\|160369068, gi... - gi\|161510259\|ref\|YP_001575918.1\| hypothetical protein USA300HOU_2042 [Staphylococcus aureus subsp. a... gi\|57284903, gi\|... - gi\|57650717\|ref\|YP_186851.1\| hypothetical protein SACOL2034 [Staphylococcus aureus subsp. aureus COL... gi\|87126466, gi\|... - gi\|87160492\|ref\|YP_494649.1\| hypothetical protein SAUSA300_1998 [Staphylococcus aureus subsp. aureus... gi\|87160492\|ref\|... - putative membrane protein [Staphylococcus aureus subsp. aureus USA300], hypothetical protein SAUSA30... gi\|150374964, gi... - gi\|151222164\|ref\|YP_001332986.1\| hypothetical protein NWMN_1952 [Staphylococcus aureus subsp. aureus...	244.0	[0..3]	[350..2]
gi\|72494658, gi\|... - gi\|73662143\|ref\|YP_300924.1\| putative transporter component [Staphylococcus saprophyticus subsp. sap...	242.0	[0..1]	[349..1]
gi\|74312555, gi\|... - gi\|74312555\|ref\|YP_310974.1\| putative transport system permease protein [Shigella sonnei Ss046], gi\|...	236.0	[0..1]	[352..1]
gi\|187768960, gi... - gi\|187768960\|gb\|EDU32804.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4196... gi\|189361189, gi... - gi\|189361189\|gb\|EDU79608.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4486... gi\|168788680, gi... - gi\|189371577\|gb\|EDU89993.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC869]... gi\|13362283, gi\|... - gi\|15832069\|ref\|NP_310842.1\| putative transport system permease protein [Escherichia coli O157:H7 st... gi\|168782295, gi... - gi\|189000110\|gb\|EDU69096.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4076... gi\|168751659, gi... - gi\|188014324\|gb\|EDU52446.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4113... gi\|189365824, gi... - gi\|189365824\|gb\|EDU84240.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4501... gi\|168757557, gi... - gi\|189355510\|gb\|EDU73929.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC4401... gi\|254593195, gi... - gi\|254793795\|ref\|YP_003078632.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|13362283, gi\|... - gi\|15832069\|ref\|NP_310842.1\| putative transport system permease protein [Escherichia coli O157:H7], ... gi\|226237420 - gi\|226237420\|dbj\|BAH46942.1\| predicted inner membrane protein [Escherichia coli O55:H7] gi\|209748242, gi... - pir\|\|G90980 probable transport system permease protein ECs2815 [imported] - Escherichia coli (strain... gi\|217329596, gi... - gi\|217329596\|ref\|ZP_03445675.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. TW... gi\|209157227, gi... - gi\|209395827\|ref\|YP_002271256.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. E... gi\|208727344, gi... - gi\|208807543\|ref\|ZP_03249880.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC... gi\|189378434, gi... - gi\|189378434\|gb\|EDU96850.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC508]... gi\|208741210, gi... - gi\|208821087\|ref\|ZP_03261407.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC... gi\|208817201, gi... - gi\|208817201\|ref\|ZP_03258293.1\| membrane protein, YeeE/YedE family [Escherichia coli O157:H7 str. EC...	235.0	[0..1]	[352..1]
gi\|25357353 - pir\|\|D85826 probable transport system permease protein yeeE [imported] - Escherichia coli (strain O1... gi\|15802492, gi\|... - gi\|15802492\|ref\|NP_288518.1\| putative transport system permease protein [Escherichia coli O157:H7 ED...	235.0	[0..1]	[352..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMILSGLI CGALLGFVMQ RGRFCLTGGF RDMYIVKNNR MFYALLIAIS VQSVGVFALI  60
   61 QAGLLTYEAG AFPWLGTVIG GYIFGLGIVL AGGCATGTWY RAGEGLIGSW IALFTYMVMS 120
  121 AVMRSPHASG LNQTLQHYST EHNSIAETFN LSVWPLVAVL LVITLWVVMK ELKKPKLKVA 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.408935
Match:	PF04143.5
Description:	No description for PF04143.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLPPRRTGIA HILFEKRWHP FVTAVLIGLI ALLAWPLSEA TGRMFGLGIT SPTANILQFL  60
   61 VAGDMKYINW GVFLVLGIFV GSFIAAKASR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [271-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFRVRAADAQ TTLRSGLGGV LMGFGASIAG GCSIGNGLVM TAMMTWQGWI GLVFMILGVW  60
   61 TASWLVYVRP QRKARLATAA AN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.259637
Match:	PF04143.5
Description:	No description for PF04143.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits