YRC Public Data Repository - Protein Structure Prediction

Protein:	YEBZ_ECOLI
Organism:	Escherichia coli
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEBZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|7474798, gi\|1... - pir\|\|F69764 copper export protein homolog ycnJ - Bacillus subtilis, gi\|1805464\|dbj\|BAA09026.1\| ycnJ... gi\|2632696, gi\|1... - gi\|2632696\|emb\|CAB12203.1\| ycnJ [Bacillus subtilis subsp. subtilis str. 168], gi\|16077463\|ref\|NP_388...	189.0	[0..2]	[287..137]
gi\|75511810, gi\|... - gi\|75511810\|ref\|ZP_00734428.1\| COG1276: Putative copper export protein [Escherichia coli 53638], gi\|...	184.0	[0..1]	[290..1]
gi\|194439066, gi... - gi\|83585559\|ref\|ZP_00924203.1\| COG1276: Putative copper export protein [Escherichia coli 101-1], gi\|...	182.0	[0..1]	[290..1]
gi\|168762367, gi... - gi\|189367396\|gb\|EDU85812.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|168758580, gi... - gi\|189354638\|gb\|EDU73057.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|168752091, gi... - gi\|188013987\|gb\|EDU52109.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|254793464, gi... - gi\|254793464\|ref\|YP_003078301.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|217318236, gi... - gi\|217328889\|ref\|ZP_03444970.1\| copper resistance protein D [Escherichia coli O157:H7 str. TW14588],... gi\|25349106, gi\|... - pir\|\|B85796 probable resistance protein Z2888 [imported] - Escherichia coli (strain O157:H7, substra... gi\|209161023, gi... - gi\|209399623\|ref\|YP_002270922.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4115],... gi\|208740907, gi... - gi\|208820784\|ref\|ZP_03261104.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4042], ... gi\|12515890, gi\|... - gi\|15802253\|ref\|NP_288277.1\| putative resistance protein [Escherichia coli O157:H7 EDL933], gi\|12515... gi\|15831804, gi\|... - gi\|15831804\|ref\|NP_310577.1\| putative resistance protein [Escherichia coli O157:H7], gi\|13362018\|dbj... gi\|168788259, gi... - gi\|189371968\|gb\|EDU90384.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|188999432, gi... - gi\|188999432\|gb\|EDU68418.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|168777765, gi... - gi\|187767065\|gb\|EDU30909.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|189360300, gi... - gi\|189360300\|gb\|EDU78719.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|208731263, gi... - gi\|208816920\|ref\|ZP_03258040.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4045], ... gi\|15831804, gi\|... - gi\|15831804\|ref\|NP_310577.1\| putative resistance protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208810500, gi... - gi\|208810500\|ref\|ZP_03252376.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC4206], ... gi\|195939741 - gi\|195939741\|ref\|ZP_03085123.1\| putative resistance protein [Escherichia coli O157:H7 str. EC4024] gi\|189375623, gi... - gi\|189375623\|gb\|EDU94039.1\| copper resistance protein D [Escherichia coli O157:H7 str. EC508], gi\|16...	182.0	[0..1]	[290..1]
gi\|75235356, gi\|... - gi\|75235356\|ref\|ZP_00719582.1\| COG1276: Putative copper export protein [Escherichia coli E110019], g...	182.0	[0..1]	[290..1]
gi\|110615333, gi... - gi\|110805785\|ref\|YP_689305.1\| putative resistance protein [Shigella flexneri 5 str. 8401], gi\|110615...	181.0	[0..1]	[290..1]
gi\|193066050, gi... - gi\|75255855\|ref\|ZP_00727594.1\| COG1276: Putative copper export protein [Escherichia coli E22], gi\|19... gi\|191168516, gi... - gi\|75228306\|ref\|ZP_00714958.1\| COG1276: Putative copper export protein [Escherichia coli B7A], gi\|19... gi\|194429637, gi... - gi\|75209114\|ref\|ZP_00709369.1\| COG1276: Putative copper export protein [Escherichia coli B171], gi\|1... gi\|75190869, gi\|... - gi\|75190869\|ref\|ZP_00704136.1\| COG1276: Putative copper export protein [Escherichia coli E24377A], g... gi\|218352138, gi... - gi\|218695406\|ref\|YP_002403073.1\| conserved hypothetical protein; putative inner membrane protein [Es...	181.0	[0..1]	[290..1]
gi\|228656100, gi... - gi\|229127267\|ref\|ZP_04256263.1\| Copper resistance protein [Bacillus cereus BDRD-Cer4], gi\|228656100\|... gi\|30019980, gi\|... - gi\|30019980\|ref\|NP_831611.1\| copper resistance protein [Bacillus cereus ATCC 14579], gi\|29895525\|gb\|...	180.0	[0..6]	[261..150]
gi\|157161307, gi... - gi\|75195905\|ref\|ZP_00705975.1\| COG1276: Putative copper export protein [Escherichia coli HS], gi\|157... gi\|170019815, gi... - gi\|170019815\|ref\|YP_001724769.1\| copper resistance D domain-containing protein [Escherichia coli ATC... gi\|124498861, gi... - gi\|124530966\|ref\|ZP_01701422.1\| copper resistance D domain protein [Escherichia coli B], gi\|12449886...	180.0	[0..1]	[290..1]
gi\|237705792, gi... - gi\|237705792\|ref\|ZP_04536273.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218558704, gi... - gi\|218558704\|ref\|YP_002391617.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|117623995, gi... - gi\|117623995\|ref\|YP_852908.1\| hypothetical protein APECO1_893 [Escherichia coli APEC O1], gi\|1155131... gi\|91211063, gi\|... - gi\|91211063\|ref\|YP_541049.1\| hypothetical protein UTI89_C2042 [Escherichia coli UTI89], gi\|91072637\|...	179.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAFTWIALR FIHFTSLMLV FGFAMYGAWL APLTIRRLLA KRFLRLQQHA AVWSLISATA  60
   61 MLAVQGGLMG TGWTDVFSPN IWQAVLQTQF GGIWLWQIVL ALVTLIVALM QPRNMPRLLF 120
  121 MLTTAQFILL AGVGHATLNE GVTAKIHQTN HAIHLICAAA WFGGLLPVLW CMQLIKGRWR 180
  181 HQAIQALMRF SWCGHFAVIG VLASGVLNAL LITGFPPTLT TYWGQLLLLK AILVMIMVVI 240
  241 ALANRYVLVP RMRQDEDRAA PWFVWMTKLE WAIGAVVLVI ISLLATLEPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits