YRC Public Data Repository - Protein Structure Prediction

Protein:	YEBG_ECOLI
Organism:	Escherichia coli
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEBG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82543672, gi\|... - gi\|82543672\|ref\|YP_407619.1\| DNA damage-inducible protein YebG [Shigella boydii Sb227], gi\|81245083\|...	125.0	[0..1]	[82..1]
gi\|151365580, gi... - gi\|153000962\|ref\|YP_001366643.1\| YebG family protein [Shewanella baltica OS185], gi\|151365580\|gb\|ABS... gi\|160861197, gi... - gi\|160875675\|ref\|YP_001554991.1\| YebG family protein [Shewanella baltica OS195], gi\|160861197\|gb\|ABX...	125.0	[0..1]	[95..1]
gi\|217973078, gi... - gi\|217973078\|ref\|YP_002357829.1\| YebG family protein [Shewanella baltica OS223], gi\|217498213\|gb\|ACK... gi\|68520015, gi\|... - gi\|68542319\|ref\|ZP_00582052.1\| YebG [Shewanella baltica OS155], gi\|68520015\|gb\|EAN43531.1\| YebG [She...	124.0	[0..1]	[81..1]
gi\|24348650, gi\|... - gi\|24374147\|ref\|NP_718190.1\| hypothetical protein SO_2604 [Shewanella oneidensis MR-1], gi\|24348650\|... SO2604 - conserved hypothetical protein	124.0	[0..1]	[95..1]
gi\|78508988, gi\|... - gi\|78691601\|ref\|ZP_00856208.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508988\|gb\|... gi\|82498119, gi\|... - gi\|82498119\|ref\|ZP_00883633.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82403868\|gb\|...	123.0	[0..1]	[95..1]
gi\|120598620, gi... - gi\|82743253\|ref\|ZP_00905910.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719384\|... gi\|77815172, gi\|... - gi\|77815172\|ref\|ZP_00814413.1\| YebG [Shewanella putrefaciens CN-32], gi\|77809840\|gb\|EAO94230.1\| YebG...	122.0	[0..1]	[83..1]
gi\|238912059 - gi\|238912059\|ref\|ZP_04655896.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yebG] [protein=DNA damage-inducible protein YebG] [protein_id=YP_005237841.1] [location=comple... gi\|207856597, gi... - gi\|207856597\|ref\|YP_002243248.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|224583615, gi... - gi\|224583615\|ref\|YP_002637413.1\| hypothetical protein SPC_1834 [Salmonella enterica subsp. enterica ... gi\|198244625, gi... - gi\|198244625\|ref\|YP_002215205.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|205352412, gi... - gi\|205352412\|ref\|YP_002226213.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|197250840, gi... - gi\|197250840\|ref\|YP_002146141.1\| yebG protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197241960, gi... - gi\|197263705\|ref\|ZP_03163779.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|62180457, gi\|... - gi\|62180457\|ref\|YP_216874.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|194455654, gi... - gi\|194469290\|ref\|ZP_03075274.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|194736396, gi... - gi\|194736396\|ref\|YP_002114917.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194444152, gi... - gi\|194444152\|ref\|YP_002041147.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194406027, gi... - gi\|194447723\|ref\|YP_002045935.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|195634280, gi... - gi\|195634280\|gb\|EDX52632.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|205342737, gi... - gi\|205342737\|gb\|EDZ29501.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168241506, gi... - gi\|205339350\|gb\|EDZ26114.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168259849, gi... - gi\|205350747\|gb\|EDZ37378.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168233696, gi... - gi\|205332305\|gb\|EDZ19069.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168238508, gi... - gi\|197288661\|gb\|EDY28036.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|16420417, gi\|... - gi\|16765224\|ref\|NP_460839.1\| DNA damage-inducible protein YebG [Salmonella typhimurium LT2], gi\|1642... gi\|167552488, gi... - gi\|205322920\|gb\|EDZ10759.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|167993857, gi... - gi\|205328201\|gb\|EDZ14965.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova...	121.0	[0..1]	[96..1]
gi\|214002654 - gi\|214002654\|ref\|ZP_03413389.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|29137103, gi\|... - gi\|29141476\|ref\|NP_804818.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213426802 - gi\|213426802\|ref\|ZP_03359552.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|16760833 - gi\|16760833\|ref\|NP_456450.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213161273 - gi\|213161273\|ref\|ZP_03346983.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|25367917, gi\|... - gi\|25367917\|pir\|\|AF0741 conserved hypothetical protein STY2088 [imported] - Salmonella enterica subs... gi\|213973829 - gi\|213973829\|ref\|ZP_03401088.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213857228 - gi\|213857228\|ref\|ZP_03384199.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213618637 - gi\|213618637\|ref\|ZP_03372463.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213586019 - gi\|213586019\|ref\|ZP_03367845.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri...	120.0	[0..1]	[96..1]
gi\|117920222, gi... - gi\|78685073\|ref\|ZP_00849854.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78507297\|gb...	118.0	[0..1]	[95..1]
gi\|114334695, gi... - gi\|69952551\|ref\|ZP_00639980.1\| YebG [Shewanella frigidimarina NCIMB 400], gi\|69164137\|gb\|EAN73227.1\|...	118.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEVKYVVI REGEEKMSFT SKKEADAYDK MLDTADLLDT WLTNSPVQME DEQREALSLW  60
   61 LAEQKDVLST ILKTGKLPSP QVVGAESEEE DASHAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.022276
Match:	PF07130.3
Description:	No description for PF07130.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.651	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.651	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.638	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.629	N/A	N/A	a.29.16	Description not found.
View	Download	0.582	N/A	N/A	a.29.16	Description not found.
View	Download	0.576	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.576	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.501	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.499	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.490	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.490	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.440	N/A	N/A	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.361	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.345	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits