YRC Public Data Repository - Protein Structure Prediction

Protein:	YEBC_ECOLI
Organism:	Escherichia coli
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEBC_ECOLI.

Description	E-value	Query Range	Subject Range
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	388.0	[0..1]	[246..1]
gi\|22219064 - gi\|22219064\|pdb\|1KON\|A Chain A, Crystal Structure Of E.Coli Yebc	385.0	[0..1]	[246..4]
gi\|15802277, gi\|... - gi\|15802277\|ref\|NP_288301.1\| hypothetical protein Z2916 [Escherichia coli O157:H7 EDL933], gi\|125159... YEBC_ECOL6 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... YEBC_ECOL6 - UPF0082 protein yebC OS=Escherichia coli O6 GN=yebC PE=3 SV=1 YEBC_ECO57 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O157:H7 GN=yebC PE=3 SV=1 gi\|227885708, gi... - gi\|227885708\|ref\|ZP_04003513.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783728... gi\|226900575, gi... - gi\|237705818\|ref\|ZP_04536299.1\| yebC [Escherichia sp. 3_2_53FAA], gi\|226900575\|gb\|EEH86834.1\| yebC [... gi\|242377585, gi... - gi\|251785312\|ref\|YP_002999616.1\| hypothetical protein B21_01823 [Escherichia coli BL21], gi\|24237758... gi\|254288712, gi... - gi\|254288712\|ref\|YP_003054460.1\| hypothetical protein ECD_01835 [Escherichia coli BL21(DE3)], gi\|253... gi\|115513140, gi... - gi\|117624016\|ref\|YP_852929.1\| hypothetical protein APECO1_914 [Escherichia coli APEC O1], gi\|1155131... gi\|254161924, gi... - gi\|254161924\|ref\|YP_003045032.1\| hypothetical protein ECB_01835 [Escherichia coli B str. REL606], gi... gi\|254592888, gi... - gi\|254793488\|ref\|YP_003078325.1\| hypothetical protein ECSP_2438 [Escherichia coli O157:H7 str. TW143... gi\|75511835, gi\|... - gi\|75511835\|ref\|ZP_00734453.1\| COG0217: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|75239715, gi\|... - gi\|75239715\|ref\|ZP_00723678.1\| COG0217: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|157161333, gi... - gi\|75195929\|ref\|ZP_00705999.1\| COG0217: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|157078967, gi... - gi\|75190893\|ref\|ZP_00704160.1\| COG0217: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|209767438, gi... - pir\|\|B85799 hypothetical protein yebC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|170683235, gi... - gi\|170683235\|ref\|YP_001743380.1\| hypothetical protein EcSMS35_1322 [Escherichia coli SMS-3-5], gi\|17... gi\|168801900, gi... - gi\|189376041\|gb\|EDU94457.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208810508, gi... - gi\|208810508\|ref\|ZP_03252384.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|195940290 - gi\|195940290\|ref\|ZP_03085672.1\| hypothetical protein EscherichcoliO157_28499 [Escherichia coli O157:... gi\|208820490, gi... - gi\|208820490\|ref\|ZP_03260810.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|208731253, gi... - gi\|208816910\|ref\|ZP_03258030.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|215265149, gi... - gi\|215487077\|ref\|YP_002329508.1\| hypothetical protein E2348C_1989 [Escherichia coli O127:H6 str. E23... gi\|209400343, gi... - gi\|209400343\|ref\|YP_002270947.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 ... gi\|188017405, gi... - gi\|188017405\|gb\|EDU55527.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168762342, gi... - gi\|189367318\|gb\|EDU85734.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189355163, gi... - gi\|189355163\|gb\|EDU73582.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187768083, gi... - gi\|187768083\|gb\|EDU31927.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168770847, gi... - gi\|189360282\|gb\|EDU78701.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189370673, gi... - gi\|189370673\|gb\|EDU89089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168783164, gi... - gi\|188999493\|gb\|EDU68479.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|13362042, gi\|... - gi\|15831828\|ref\|NP_310601.1\| hypothetical protein ECs2574 [Escherichia coli O157:H7 str. Sakai], gi\|... YEBC_ECOL5 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) ... YEBC_ECOUT - Probable transcriptional regulatory protein YebC OS=Escherichia coli (strain UTI89 / UPEC) GN=yebC P... gi\|218356116, gi... - gi\|218548575\|ref\|YP_002382366.1\| hypothetical protein EFER_1208 [Escherichia fergusonii ATCC 35469],... gi\|217318093, gi... - gi\|217328746\|ref\|ZP_03444827.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|218558729, gi... - gi\|218558729\|ref\|YP_002391642.1\| hypothetical protein ECS88_1922 [Escherichia coli S88], gi\|21836549... gi\|218361220, gi... - gi\|218554452\|ref\|YP_002387365.1\| hypothetical protein ECIAI1_1951 [Escherichia coli IAI1], gi\|218361... gi\|218695430, gi... - gi\|218695430\|ref\|YP_002403097.1\| hypothetical protein EC55989_2043 [Escherichia coli 55989], gi\|2183... gi\|218689802, gi... - gi\|218689802\|ref\|YP_002398014.1\| hypothetical protein ECED1_2069 [Escherichia coli ED1a], gi\|2184273... gi\|218705365, gi... - gi\|218705365\|ref\|YP_002412884.1\| hypothetical protein ECUMN_2162 [Escherichia coli UMN026], gi\|21843... gi\|218369550, gi... - gi\|218699564\|ref\|YP_002407193.1\| hypothetical protein ECIAI39_1185 [Escherichia coli IAI39], gi\|2183...	385.0	[0..1]	[246..1]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	384.0	[0..1]	[246..1]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	383.0	[0..1]	[246..1]
YEBC_SHIBS - Probable transcriptional regulatory protein YebC OS=Shigella boydii serotype 4 (strain Sb227) GN=yeb...	383.0	[0..1]	[246..1]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	383.0	[0..1]	[246..1]
gi\|194711929, gi... - gi\|194736427\|ref\|YP_002114934.1\| hypothetical protein SeSA_A2053 [Salmonella enterica subsp. enteric... YEBC_SALTY - UPF0082 protein yebC OS=Salmonella typhimurium GN=yebC PE=3 SV=1 gi\|194469640, gi... - gi\|194469640\|ref\|ZP_03075624.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194444208, gi... - gi\|194444208\|ref\|YP_002041164.1\| hypothetical protein SNSL254_A2058 [Salmonella enterica subsp. ente... gi\|205342638, gi... - gi\|205342638\|gb\|EDZ29402.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|29141459, gi\|... - gi\|29141459\|ref\|NP_804801.1\| hypothetical protein t0978 [Salmonella enterica subsp. enterica serovar... gi\|198244624, gi... - gi\|198244624\|ref\|YP_002215186.1\| conserved hypothetical protein TIGR01033 [Salmonella enterica subsp... gi\|16760849 - gi\|16760849\|ref\|NP_456466.1\| hypothetical protein STY2107 [Salmonella enterica subsp. enterica serov... gi\|197362108, gi... - gi\|197362108\|ref\|YP_002141745.1\| hypothetical protein SSPA0904 [Salmonella enterica subsp. enterica ... YEBC_SALTI - UPF0082 protein yebC OS=Salmonella typhi GN=yebC PE=3 SV=1 YEBC_SALTI - Probable transcriptional regulatory protein YebC OS=Salmonella typhi GN=yebC PE=3 SV=1 gi\|197264424, gi... - gi\|197264424\|ref\|ZP_03164498.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YEBC_SALTY - Probable transcriptional regulatory protein YebC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ... gi\|197250988, gi... - gi\|197250988\|ref\|YP_002146123.1\| hypothetical protein SeAg_B1224 [Salmonella enterica subsp. enteric... gi\|205327899, gi... - gi\|205327899\|gb\|EDZ14663.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205322905, gi... - gi\|205322905\|gb\|EDZ10744.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161613545, gi... - gi\|161613545\|ref\|YP_001587510.1\| hypothetical protein SPAB_01265 [Salmonella enterica subsp. enteric... gi\|168462569, gi... - gi\|195633896\|gb\|EDX52248.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YEBC_SALTY - UPF0082 protein yebC OS=Salmonella typhimurium GN=yebC PE=3 SV=1 gi\|205350673, gi... - gi\|205350673\|gb\|EDZ37304.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197288645, gi... - gi\|197288645\|gb\|EDY28020.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168234039, gi... - gi\|205331992\|gb\|EDZ18756.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213426400 - gi\|213426400\|ref\|ZP_03359150.1\| hypothetical protein SentesTyphi_12659 [Salmonella enterica subsp. e... gi\|206708383, gi... - gi\|207856580\|ref\|YP_002243231.1\| hypothetical protein SEN1104 [Salmonella enterica subsp. enterica s... gi\|205272176, gi... - gi\|205352395\|ref\|YP_002226196.1\| hypothetical protein SG1153 [Salmonella enterica subsp. enterica se... gi\|199602746, gi... - gi\|200390301\|ref\|ZP_03216912.1\| conserved hypothetical protein TIGR01033 [Salmonella enterica subsp.... gi\|213855275 - gi\|213855275\|ref\|ZP_03383515.1\| hypothetical protein SentesT_14892 [Salmonella enterica subsp. enter... gi\|213649295 - gi\|213649295\|ref\|ZP_03379348.1\| hypothetical protein SentesTy_19640 [Salmonella enterica subsp. ente... YEBC_SALPA - Probable transcriptional regulatory protein YebC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB4... gi\|238912041 - gi\|238912041\|ref\|ZP_04655878.1\| hypothetical protein SentesTe_13046 [Salmonella enterica subsp. ente... YEBC_SALPA - UPF0082 protein yebC OS=Salmonella paratyphi A GN=yebC PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yebC] [protein=hypothetical protein] [protein_id=YP_005237863.1] [location=complement(2005190....	383.0	[0..1]	[246..1]
YEBC_SALCH - UPF0082 protein yebC OS=Salmonella choleraesuis GN=yebC PE=3 SV=1 gi\|224468123, gi... - gi\|224583596\|ref\|YP_002637394.1\| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica ... YEBC_SALCH - UPF0082 protein yebC OS=Salmonella choleraesuis GN=yebC PE=3 SV=1 YEBC_SALCH - Probable transcriptional regulatory protein YebC OS=Salmonella choleraesuis (strain SC-B67) GN=yebC ...	383.0	[0..1]	[246..1]
gi\|187428436, gi... - gi\|75175518\|ref\|ZP_00695734.1\| COG0217: Uncharacterized conserved protein [Shigella boydii BS512], g...	383.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSKWANT RHRKAAQDAK RGKIFTKIIR ELVTAAKLGG GDPDANPRLR AAVDKALSNN  60
   61 MTRDTLNRAI ARGVGGDDDA NMETIIYEGY GPGGTAIMIE CLSDNRNRTV AEVRHAFSKC 120
  121 GGNLGTDGSV AYLFSKKGVI SFEKGDEDTI MEAALEAGAE DVVTYDDGAI DVYTAWEEMG 180
  181 KVRDALEAAG LKADSAEVSM IPSTKADMDA ETAPKLMRLI DMLEDCDDVQ EVYHNGEISD 240
  241 EVAATL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits