YRC Public Data Repository - Protein Structure Prediction

Protein:	YEAV_ECOLI
Organism:	Escherichia coli
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEAV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	575.0	[0..1]	[479..59]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	561.0	[0..2]	[472..60]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	560.0	[0..2]	[472..60]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	550.0	[0..2]	[472..60]
gi\|56461488, gi\|... - gi\|56461488\|ref\|YP_156769.1\| choline-glycine betaine transporter [Idiomarina loihiensis L2TR], gi\|56...	548.0	[0..2]	[476..61]
gi\|76590290, gi\|... - gi\|76794458\|ref\|ZP_00776927.1\| BCCT transporter [Pseudoalteromonas atlantica T6c], gi\|76590290\|gb\|EA...	545.0	[0..2]	[462..39]
gi\|34482179 - gi\|34482179\|emb\|CAE09180.1\| PUTATIVE CHOLINE TRANSPORTER [Wolinella succinogenes] gi\|34556465 - gi\|34556465\|ref\|NP_906280.1\| putative choline transporter [Wolinella succinogenes DSM 1740]	544.0	[0..2]	[478..56]
gi\|196156622, gi... - gi\|88795308\|ref\|ZP_01111007.1\| Choline-glycine betaine transporter [Alteromonas macleodii 'Deep ecot...	543.0	[0..2]	[459..59]
gi\|93452062, gi\|... - gi\|94267305\|ref\|ZP_01290841.1\| BCCT transporter [delta proteobacterium MLMS-1], gi\|93452062\|gb\|EAT02...	542.0	[0..2]	[465..65]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLAMGLVI YLATSKYGNI RLGEGKPEYS TLSWLFMFIC AGLGSSTLYW GVAEWAYYYQ  60
   61 TPGLNI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APRSQQALEF SVPYSFFHWG ISAWATYTLA SLIMAYHFHV RKNKGLSLSG IIAAITGVRP  60
   61 QGPWGKLVDL MFLIATVGAL TISLVVTAAT FTRGLSALTG LPDNFTVQAF VILLSGGIFC 120
  121 LSSWIGINNG LQRLSKMVGW GAFLLPLLVL IVGPTEFITN SIINAIGLTT QNFLQMSLFT 180
  181 DPLGDGSFTR NWTVFYWLWW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [267-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISYTPGVAMF VTRVSRGRKI KEVIWGLILG STVGCWFFFG VMESYAIHQF INGVINVPQV  60
   61 LETLGGETAV QQVLMSLPAG KLFLAAYLGV MIIFLASHMD AVAYTMAATS TRNLQEGDDP 120
  121 DRGLRLFWCV VITLIPLSIL FTGASLETMK TTVVLTALPF LVILLVKVGG FIRWLKQDYA 180
  181 DIPAHQVEHY LPQTPVEALE KTPVLPAGTV FKGDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits