YRC Public Data Repository - Protein Structure Prediction

Protein:	YEAK_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEAK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|190150541, gi... - gi\|190150541\|ref\|YP_001969066.1\| hypothetical protein APP7_1272 [Actinobacillus pleuropneumoniae ser... gi\|32035604 - gi\|32035604\|ref\|ZP_00135525.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208689, gi... - gi\|126208689\|ref\|YP_001053914.1\| hypothetical protein APL_1221 [Actinobacillus pleuropneumoniae L20]...	147.0	[0..11]	[166..1]
gi\|49530803, gi\|... - gi\|50084827\|ref\|YP_046337.1\| hypothetical protein ACIAD1670 [Acinetobacter sp. ADP1], gi\|49530803\|em...	144.0	[0..11]	[163..1]
gi\|242377507, gi... - gi\|251785234\|ref\|YP_002999538.1\| hypothetical protein B21_01744 [Escherichia coli BL21], gi\|24237750... gi\|226900496, gi... - gi\|237705739\|ref\|ZP_04536220.1\| YbaK/prolyl-tRNA synthetase-associated domain-containing protein [Es... gi\|254161845, gi... - gi\|254161845\|ref\|YP_003044953.1\| hypothetical protein ECB_01756 [Escherichia coli B str. REL606], gi... gi\|254288633, gi... - gi\|254288633\|ref\|YP_003054381.1\| hypothetical protein ECD_01756 [Escherichia coli BL21(DE3)], gi\|253... gi\|188495375, gi... - gi\|75513715\|ref\|ZP_00736091.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|192925769, gi... - gi\|75255308\|ref\|ZP_00727141.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|194428559, gi... - gi\|75210264\|ref\|ZP_00710432.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|117623957, gi... - gi\|117623957\|ref\|YP_852870.1\| hypothetical protein APECO1_855 [Escherichia coli APEC O1], gi\|1155130... gi\|218365423, gi... - gi\|218558654\|ref\|YP_002391567.1\| hypothetical protein ECS88_1841 [Escherichia coli S88], gi\|21836542... gi\|218427291, gi... - gi\|218689727\|ref\|YP_002397939.1\| hypothetical protein ECED1_1993 [Escherichia coli ED1a], gi\|2184272... gi\|169754795, gi... - gi\|170019867\|ref\|YP_001724821.1\| YbaK/prolyl-tRNA synthetase associated region [Escherichia coli ATC... gi\|124498129, gi... - gi\|124532178\|ref\|ZP_01702141.1\| YbaK/prolyl-tRNA synthetase associated region [Escherichia coli B], ... gi\|170684068, gi... - gi\|170684068\|ref\|YP_001743462.1\| YbaK/prolyl-tRNA synthetase-associated domain-containing protein [E... gi\|157161249, gi... - gi\|75195855\|ref\|ZP_00705925.1\| COG2606: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|194439609, gi... - gi\|83584973\|ref\|ZP_00923628.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|91072578, gi\|... - gi\|91211004\|ref\|YP_540990.1\| hypothetical protein UTI89_C1983 [Escherichia coli UTI89], gi\|91072578\|...	144.0	[0..1]	[167..1]
gi\|152978962, gi... - gi\|75429593\|ref\|ZP_00732304.1\| hypothetical protein AsucDRAFT_0626 [Actinobacillus succinogenes 130Z...	144.0	[0..6]	[166..1]
gi\|81245226, gi\|... - gi\|82543815\|ref\|YP_407762.1\| hypothetical protein SBO_1306 [Shigella boydii Sb227], gi\|81245226\|gb\|A... gi\|194433471, gi... - gi\|83569602\|ref\|ZP_00921053.1\| COG2606: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|187429559, gi... - gi\|75177287\|ref\|ZP_00697376.1\| COG2606: Uncharacterized conserved protein [Shigella boydii BS512], g...	144.0	[0..1]	[167..1]
gi\|26248046, gi\|... - gi\|26248046\|ref\|NP_754086.1\| hypothetical protein c2192 [Escherichia coli CFT073], gi\|26108449\|gb\|AA... gi\|227837357, gi... - gi\|227885784\|ref\|ZP_04003589.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c...	144.0	[0..1]	[167..1]
gi\|24112819, gi\|... - gi\|24112819\|ref\|NP_707329.1\| hypothetical protein SF1437 [Shigella flexneri 2a str. 301], gi\|2405175... gi\|30041202, gi\|... - gi\|30062953\|ref\|NP_837124.1\| hypothetical protein S1552 [Shigella flexneri 2a str. 2457T], gi\|300412...	143.0	[0..1]	[167..1]
gi\|75236746, gi\|... - gi\|75236746\|ref\|ZP_00720817.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|218352078, gi... - gi\|218695346\|ref\|YP_002403013.1\| hypothetical protein EC55989_1956 [Escherichia coli 55989], gi\|2183... gi\|190900970, gi... - gi\|75227728\|ref\|ZP_00714460.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|209919149, gi... - gi\|209919149\|ref\|YP_002293233.1\| hypothetical protein ECSE_1958 [Escherichia coli SE11], gi\|20991240... gi\|218361123, gi... - gi\|218554355\|ref\|YP_002387268.1\| hypothetical protein ECIAI1_1851 [Escherichia coli IAI1], gi\|218361... gi\|74311901, gi\|... - gi\|74311901\|ref\|YP_310320.1\| hypothetical protein SSON_1374 [Shigella sonnei Ss046], gi\|73855378\|gb\|...	142.0	[0..1]	[167..1]
gi\|238788069, gi... - gi\|77974250\|ref\|ZP_00829791.1\| COG2606: Uncharacterized conserved protein [Yersinia frederiksenii AT...	141.0	[0..11]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEMAKGSVT HQRLIALLSQ EGADFRVVTH EAVGKCEAVS EIRGTALGQG AKALVCKVKG  60
   61 NGVNQHVLAI LAADQQADLS QLASHIGGLR ASLASPAEVD ELTGCVFGAI PPFSFHPKLK 120
  121 LVADPLLFER FDEIAFNAGM LDKSVILKTA DYLRIAQPEL VNFRRTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2dxaA
Description:	No description for 2dxaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits