YRC Public Data Repository - Protein Structure Prediction

Protein:	YDJM_ECOLI
Organism:	Escherichia coli
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDJM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13361901 - gi\|13361901\|dbj\|BAB35857.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|117623901, gi... - gi\|117623901\|ref\|YP_852814.1\| hypothetical protein APECO1_798 [Escherichia coli APEC O1], gi\|1155130... gi\|13361901 - gi\|13361901\|dbj\|BAB35857.1\| hypothetical protein [Escherichia coli O157:H7] gi\|81241222, gi\|... - gi\|82777074\|ref\|YP_403423.1\| hypothetical protein SDY_1821 [Shigella dysenteriae Sd197], gi\|81241222... gi\|91210943, gi\|... - gi\|91210943\|ref\|YP_540929.1\| hypothetical protein UTI89_C1922 [Escherichia coli UTI89], gi\|91072517\|... gi\|209768758, gi... - pir\|\|B90933 hypothetical protein ECs2434 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|237705677, gi... - gi\|237705677\|ref\|ZP_04536158.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|15802139, gi\|... - gi\|15802139\|ref\|NP_288161.1\| hypothetical protein Z2757 [Escherichia coli O157:H7 EDL933], gi\|125157...	169.0	[0..1]	[200..1]
gi\|82543867, gi\|... - gi\|82543867\|ref\|YP_407814.1\| hypothetical protein SBO_1362 [Shigella boydii Sb227], gi\|81245278\|gb\|A...	168.0	[0..1]	[200..1]
gi\|26108384, gi\|... - gi\|26247981\|ref\|NP_754021.1\| Hypothetical protein ydjM precursor [Escherichia coli CFT073], gi\|26108...	168.0	[0..1]	[200..1]
gi\|161367597 - gi\|161367597\|ref\|NP_288161.2\| hypothetical protein Z2757 [Escherichia coli O157:H7 EDL933] gi\|168749455, gi... - gi\|188016226\|gb\|EDU54348.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|253773318, gi... - gi\|254288575\|ref\|YP_003054323.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|38704009 - gi\|38704009\|ref\|NP_310461.2\| hypothetical protein ECs2434 [Escherichia coli O157:H7] gi\|38704009 - gi\|38704009\|ref\|NP_310461.2\| hypothetical protein ECs2434 [Escherichia coli O157:H7 str. Sakai] gi\|189356195, gi... - gi\|189356195\|gb\|EDU74614.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|242377450, gi... - gi\|251785177\|ref\|YP_002999481.1\| hypothetical protein B21_01685 [Escherichia coli BL21], gi\|24237745... gi\|161950108 - gi\|161950108\|ref\|YP_403423.2\| hypothetical protein SDY_1821 [Shigella dysenteriae Sd197] gi\|254793346, gi... - gi\|254793346\|ref\|YP_003078183.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|162138431 - gi\|162138431\|ref\|YP_540929.2\| hypothetical protein UTI89_C1922 [Escherichia coli UTI89] gi\|253973688, gi... - gi\|254161787\|ref\|YP_003044895.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|208731201, gi... - gi\|208816858\|ref\|ZP_03257978.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|208740706, gi... - gi\|208820583\|ref\|ZP_03260903.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|195937412 - gi\|195937412\|ref\|ZP_03082794.1\| hypothetical protein EscherichcoliO157_13342 [Escherichia coli O157:... gi\|208810271, gi... - gi\|208810271\|ref\|ZP_03252147.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|215486946, gi... - gi\|215486946\|ref\|YP_002329377.1\| hypothetical protein E2348C_1857 [Escherichia coli O127:H6 str. E23... gi\|217318369, gi... - gi\|217329022\|ref\|ZP_03445103.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|209400224, gi... - gi\|209400224\|ref\|YP_002270798.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia col... gi\|209919088, gi... - gi\|209919088\|ref\|YP_002293172.1\| hypothetical protein ECSE_1897 [Escherichia coli SE11], gi\|20991234... gi\|187769447, gi... - gi\|187769447\|gb\|EDU33291.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|189000318, gi... - gi\|189000318\|gb\|EDU69304.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168762207, gi... - gi\|189367464\|gb\|EDU85880.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168770490, gi... - gi\|189360659\|gb\|EDU79078.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|170019925, gi... - gi\|170019925\|ref\|YP_001724879.1\| hypothetical protein EcolC_1904 [Escherichia coli ATCC 8739], gi\|16... gi\|170681980, gi... - gi\|170681980\|ref\|YP_001743521.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia col... gi\|189372064, gi... - gi\|189372064\|gb\|EDU90480.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168800090, gi... - gi\|189377528\|gb\|EDU95944.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|194438565, gi... - gi\|83586028\|ref\|ZP_00924666.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|124499545, gi... - gi\|124529992\|ref\|ZP_01700804.1\| membrane-bound metal-dependent hydrolase [Escherichia coli B], gi\|12... gi\|218689670, gi... - gi\|218689670\|ref\|YP_002397882.1\| hypothetical protein ECED1_1931 [Escherichia coli ED1a], gi\|2184272... gi\|218352019, gi... - gi\|218695287\|ref\|YP_002402954.1\| hypothetical protein EC55989_1895 [Escherichia coli 55989], gi\|2183... gi\|218554294, gi... - gi\|218554294\|ref\|YP_002387207.1\| hypothetical protein ECIAI1_1786 [Escherichia coli IAI1], gi\|218361... gi\|218365366, gi... - gi\|218558597\|ref\|YP_002391510.1\| hypothetical protein ECS88_1780 [Escherichia coli S88], gi\|21836536... gi\|218699705, gi... - gi\|218699705\|ref\|YP_002407334.1\| hypothetical protein ECIAI39_1326 [Escherichia coli IAI39], gi\|2183... gi\|218432323, gi... - gi\|218705226\|ref\|YP_002412745.1\| hypothetical protein ECUMN_2017 [Escherichia coli UMN026], gi\|21843...	165.0	[0..5]	[200..1]
gi\|157066868, gi... - gi\|75195798\|ref\|ZP_00705868.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75210213 - gi\|75210213\|ref\|ZP_00710381.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|191169010, gi... - gi\|75227710\|ref\|ZP_00714445.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75236802, gi\|... - gi\|75236802\|ref\|ZP_00720873.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75256131, gi\|... - gi\|75256131\|ref\|ZP_00727827.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... EG13989 - inner membrane protein regulated by LexA / Inner membrane protein, LexA regulated, function unknown gi\|188494682, gi... - gi\|75513775\|ref\|ZP_00736151.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|89108567, gi\|... - gi\|89108567\|ref\|AP_002347.1\| predicted inner membrane protein regulated by LexA [Escherichia coli st... gi\|56479917, gi\|... - gi\|56479917\|ref\|NP_707386.2\| hypothetical protein SF1502 [Shigella flexneri 2a str. 301], gi\|5638346... gi\|110805461, gi... - gi\|110805461\|ref\|YP_688981.1\| hypothetical protein SFV_1493 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|83569670 - gi\|83569670\|ref\|ZP_00921121.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Shigell... gi\|157157851, gi... - gi\|75190762\|ref\|ZP_00704029.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|161986533 - gi\|161986533\|ref\|YP_310371.2\| hypothetical protein SSON_1429 [Shigella sonnei Ss046] sp\|P64481\|YDJM_ECOLI - Inner membrane protein ydjM OS=Escherichia coli (strain K12) GN=ydjM PE=1 SV=2 gi\|170081385, gi... - gi\|170081385\|ref\|YP_001730705.1\| inner membrane protein regulated by LexA [Escherichia coli str. K-1... EG13989 - inner membrane protein regulated by LexA / Inner membrane protein, LexA regulated, function unknown YDJM_SHIFL - Inner membrane protein YdjM OS=Shigella flexneri GN=ydjM PE=3 SV=2 gi\|30063005, gi\|... - gi\|30063005\|ref\|NP_837176.1\| hypothetical protein S1619 [Shigella flexneri 2a str. 2457T], gi\|300412...	164.0	[0..5]	[200..1]
gi\|75241396, gi\|... - gi\|75241396\|ref\|ZP_00725247.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri...	164.0	[0..5]	[200..1]
gi\|161984948 - gi\|161984948\|ref\|YP_407814.2\| hypothetical protein SBO_1362 [Shigella boydii Sb227] gi\|187732483, gi... - gi\|75177345\|ref\|ZP_00697434.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Shigell...	164.0	[0..5]	[200..1]
gi\|110641849, gi... - gi\|110641849\|ref\|YP_669579.1\| hypothetical protein ECP_1675 [Escherichia coli 536], gi\|110343441\|gb\|... gi\|161486215 - gi\|161486215\|ref\|NP_754021.2\| hypothetical protein c2127 [Escherichia coli CFT073]	163.0	[0..5]	[200..1]
gi\|213864984 - gi\|213864984\|ref\|ZP_03387103.1\| hypothetical protein SentesT_34600 [Salmonella enterica subsp. enter... gi\|16502869, gi\|... - gi\|25371747\|pir\|\|AG0707 conserved hypothetical protein STY1790 [imported] - Salmonella enterica subs... gi\|213981465 - gi\|213981465\|ref\|ZP_03408724.1\| hypothetical protein Salmonellaentericaenterica_46542 [Salmonella en... gi\|214001287 - gi\|214001287\|ref\|ZP_03412022.1\| hypothetical protein Salmonellentericaenterica_12625 [Salmonella ent... gi\|213163066 - gi\|213163066\|ref\|ZP_03348776.1\| hypothetical protein Salmoneentericaenterica_24798 [Salmonella enter... gi\|213423346 - gi\|213423346\|ref\|ZP_03356336.1\| hypothetical protein Salmonentericaenterica_38147 [Salmonella enteri... gi\|29141666, gi\|... - gi\|29141666\|ref\|NP_805008.1\| hypothetical protein t1201 [Salmonella enterica subsp. enterica serovar... gi\|213426342 - gi\|213426342\|ref\|ZP_03359092.1\| hypothetical protein SentesTyphi_12319 [Salmonella enterica subsp. e... gi\|16760573 - gi\|16760573\|ref\|NP_456190.1\| hypothetical protein STY1790 [Salmonella enterica subsp. enterica serov... gi\|213622040 - gi\|213622040\|ref\|ZP_03374823.1\| hypothetical protein SentesTyp_32761 [Salmonella enterica subsp. ent...	159.0	[0..1]	[199..1]
gi\|16764672, gi\|... - gi\|16764672\|ref\|NP_460287.1\| putative SOS response protein [Salmonella typhimurium LT2], gi\|16419839... gi\|204322879, gi... - gi\|204927537\|ref\|ZP_03218738.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|207857170, gi... - gi\|207857170\|ref\|YP_002243821.1\| hypothetical protein SEN1722 [Salmonella enterica subsp. enterica s... gi\|198244414, gi... - gi\|198244414\|ref\|YP_002215803.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|199603241, gi... - gi\|200390796\|ref\|ZP_03217407.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|197211823, gi... - gi\|197248120\|ref\|YP_002146714.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|238910860 - gi\|238910860\|ref\|ZP_04654697.1\| hypothetical protein SentesTe_06962 [Salmonella enterica subsp. ente... gi\|197242145, gi... - gi\|197263890\|ref\|ZP_03163964.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|194468739, gi... - gi\|194468739\|ref\|ZP_03074723.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|62127545, gi\|... - gi\|62179912\|ref\|YP_216329.1\| LexA regulated gene, putative SOS response [Salmonella enterica subsp. ... gi\|194712921, gi... - gi\|194737419\|ref\|YP_002114341.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|205341630, gi... - gi\|205341630\|gb\|EDZ28394.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|194443166, gi... - gi\|194443166\|ref\|YP_002040581.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|168263858, gi... - gi\|205347640\|gb\|EDZ34271.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|168463279, gi... - gi\|195634455\|gb\|EDX52807.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|168233240, gi... - gi\|205332739\|gb\|EDZ19503.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|197288286, gi... - gi\|197288286\|gb\|EDY27671.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|167552321, gi... - gi\|205322986\|gb\|EDZ10825.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|167991857, gi... - gi\|205329741\|gb\|EDZ16505.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|161363638, gi... - gi\|161614274\|ref\|YP_001588239.1\| hypothetical protein SPAB_02019 [Salmonella enterica subsp. enteric...	159.0	[0..1]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIMTAEGH LLFSIACAVF AKNAELTPVL AQGDWWHIVP SAILTCLLPD IDHPKSFLGQ  60
   61 RLKWISKPIA RAFGHRGFTH SLLAVFALLA TFYLKVPEGW FIPADALQGM VLGYLSHILA 120
  121 DMLTPAGVPL LWPCRWRFRL PILVPQKGNQ LERFICMALF VWSVWMPHSL PENSAVRWSS 180
  181 QMINTLQIQF HRLIKHQVEY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.969
Match:	1ah7A
Description:	PHOSPHOLIPASE C FROM BACILLUS CEREUS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.560404338256041	bayes_pls_golite062009
hydrolase activity	0.00860832183881655	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: