YRC Public Data Repository - Protein Structure Prediction

Protein:	YDJA_ECOLI
Organism:	Escherichia coli
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDJA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78224031, gi\|... - gi\|78224031\|ref\|YP_385778.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195286\|gb\|ABB330...	180.0	[0..1]	[182..1]
gi\|148263312, gi... - gi\|88937813\|ref\|ZP_01143354.1\| nitroreductase family protein [Geobacter uraniumreducens Rf4], gi\|889...	179.0	[0..1]	[182..1]
gi\|110600504, gi... - gi\|222054060\|ref\|YP_002536422.1\| nitroreductase [Geobacter sp. FRC-32], gi\|221563349\|gb\|ACM19321.1\| ...	172.0	[0..1]	[182..1]
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	167.0	[0..1]	[182..1]
gi\|83590668, gi\|... - gi\|83590668\|ref\|YP_430677.1\| nitroreductase [Moorella thermoacetica ATCC 39073], gi\|83573582\|gb\|ABC2...	165.0	[0..1]	[182..1]
gi\|114845237, gi... - gi\|167039852\|ref\|YP_001662837.1\| nitroreductase [Thermoanaerobacter sp. X514], gi\|166854092\|gb\|ABY92... gi\|242232222, gi... - gi\|242256267\|ref\|ZP_04801161.1\| nitroreductase [Thermoanaerobacter sp. X513], gi\|242232222\|gb\|EES345...	163.0	[0..1]	[182..1]
gi\|39982089, gi\|... - gi\|39995327\|ref\|NP_951278.1\| nitroreductase family protein [Geobacter sulfurreducens PCA], gi\|399820...	163.0	[0..1]	[180..1]
gi\|241885212, gi... - gi\|241902497\|ref\|ZP_04787231.1\| nitroreductase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|... gi\|76588082, gi\|... - gi\|76796578\|ref\|ZP_00778937.1\| Nitroreductase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765880...	162.0	[0..1]	[182..1]
gi\|20808224, gi\|... - gi\|20808224\|ref\|NP_623395.1\| nitroreductase [Thermoanaerobacter tengcongensis MB4], gi\|20516820\|gb\|A... gi\|20808224 - gi\|20808224\|ref\|NP_623395.1\| Nitroreductase [Thermoanaerobacter tengcongensis MB4]	161.0	[0..1]	[182..2]

Back

Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALELLINR RSASRLAEPA PTGEQLQNIL RAGMRAPDHK SMQPWHFFVI EGEGRERFSA  60
   61 VLEQGAIAAG SDDKAIDKAR NAPFRAPLII TVVAKCEENH KVPRWEQEMS AGCAVMAMQM 120
  121 AAVAQGFGGI WRSGALTESP VVREAFGCRE QDKIVGFLYL GTPQLKASTS INVPDPTPFV 180
  181 TYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11149969304282	bayes_pls_golite062009
oxidoreductase activity	0.223640985940171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: