YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIZ_ECOLI
Organism:	Escherichia coli
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91210939, gi\|... - gi\|91210939\|ref\|YP_540925.1\| hypothetical protein UTI89_C1918 [Escherichia coli UTI89], gi\|91072513\|... gi\|115513021, gi... - gi\|117623897\|ref\|YP_852810.1\| hypothetical protein APECO1_794 [Escherichia coli APEC O1], gi\|1155130... gi\|218705222, gi... - gi\|218705222\|ref\|YP_002412741.1\| hypothetical protein ECUMN_2013 [Escherichia coli UMN026], gi\|21843... gi\|237705673, gi... - gi\|237705673\|ref\|ZP_04536154.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|170518633, gi... - gi\|170680915\|ref\|YP_001743525.1\| hypothetical protein EcSMS35_1467 [Escherichia coli SMS-3-5], gi\|17... gi\|215265014, gi... - gi\|215486942\|ref\|YP_002329373.1\| hypothetical protein E2348C_1853 [Escherichia coli O127:H6 str. E23... gi\|218558593, gi... - gi\|218558593\|ref\|YP_002391506.1\| hypothetical protein ECS88_1776 [Escherichia coli S88], gi\|21836536... gi\|218427230, gi... - gi\|218689666\|ref\|YP_002397878.1\| hypothetical protein ECED1_1927 [Escherichia coli ED1a], gi\|2184272...	163.0	[0..1]	[96..1]
gi\|110641845, gi... - gi\|110641845\|ref\|YP_669575.1\| hypothetical protein ECP_1671 [Escherichia coli 536], gi\|110343437\|gb\|... gi\|191171770, gi... - gi\|75241400\|ref\|ZP_00725251.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli... gi\|227837425, gi... - gi\|227885852\|ref\|ZP_04003657.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783742... gi\|26108380, gi\|... - gi\|26247977\|ref\|NP_754017.1\| hypothetical protein c2123 [Escherichia coli CFT073], gi\|26108380\|gb\|AA...	162.0	[0..1]	[96..1]
gi\|190900939, gi... - gi\|75227714\|ref\|ZP_00714449.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	162.0	[0..1]	[96..1]
gi\|25496390 - gi\|25496390\|pir\|\|B85781 hypothetical protein Z2753 [imported] - Escherichia coli (strain O157:H7, s... gi\|12515737, gi\|... - gi\|15802135\|ref\|NP_288157.1\| hypothetical protein Z2753 [Escherichia coli O157:H7 EDL933], gi\|125157...	161.0	[0..1]	[96..1]
gi\|24112880, gi\|... - gi\|24112880\|ref\|NP_707390.1\| hypothetical protein SF1506 [Shigella flexneri 2a str. 301], gi\|2405182... gi\|30041258, gi\|... - gi\|30063009\|ref\|NP_837180.1\| hypothetical protein S1623 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|110615013, gi... - gi\|110805465\|ref\|YP_688985.1\| hypothetical protein SFV_1497 [Shigella flexneri 5 str. 8401], gi\|1106...	161.0	[0..1]	[96..1]
gi\|168821972, gi... - gi\|205341552\|gb\|EDZ28316.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|62127549, gi\|... - gi\|62179916\|ref\|YP_216333.1\| hypothetical protein SC1346 [Salmonella enterica subsp. enterica serova... gi\|194404767, gi... - gi\|194446104\|ref\|YP_002040585.1\| hypothetical protein SNSL254_A1439 [Salmonella enterica subsp. ente... gi\|194449558, gi... - gi\|194449558\|ref\|YP_002045333.1\| hypothetical protein SeHA_C1454 [Salmonella enterica subsp. enteric... gi\|238910856 - gi\|238910856\|ref\|ZP_04654693.1\| hypothetical protein SentesTe_06942 [Salmonella enterica subsp. ente... gi\|197250998, gi... - gi\|197250998\|ref\|YP_002146710.1\| hypothetical protein SeAg_B1846 [Salmonella enterica subsp. enteric... gi\|29137298, gi\|... - gi\|29141670\|ref\|NP_805012.1\| hypothetical protein t1205 [Salmonella enterica subsp. enterica serovar... gi\|16760569 - gi\|16760569\|ref\|NP_456186.1\| hypothetical protein STY1786 [Salmonella enterica subsp. enterica serov... gi\|167552317, gi... - gi\|205322984\|gb\|EDZ10823.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336787, gi... - gi\|205336787\|gb\|EDZ23551.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|25512036, gi\|... - gi\|25512036\|pir\|\|AC0707 conserved hypothetical protein STY1786 [imported] - Salmonella enterica subs... gi\|168263854, gi... - gi\|205347537\|gb\|EDZ34168.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213618834 - gi\|213618834\|ref\|ZP_03372660.1\| hypothetical protein SentesTyp_21165 [Salmonella enterica subsp. ent... gi\|213650307 - gi\|213650307\|ref\|ZP_03380360.1\| hypothetical protein SentesTy_25511 [Salmonella enterica subsp. ente... gi\|213865018 - gi\|213865018\|ref\|ZP_03387137.1\| hypothetical protein SentesT_34790 [Salmonella enterica subsp. enter... gi\|214001284 - gi\|214001284\|ref\|ZP_03412019.1\| hypothetical protein Salmonellentericaenterica_12600 [Salmonella ent... gi\|213027328 - gi\|213027328\|ref\|ZP_03341775.1\| hypothetical protein Salmonelentericaenterica_35019 [Salmonella ente... gi\|213163062 - gi\|213163062\|ref\|ZP_03348772.1\| hypothetical protein Salmoneentericaenterica_24778 [Salmonella enter... gi\|213426338 - gi\|213426338\|ref\|ZP_03359088.1\| hypothetical protein SentesTyphi_12299 [Salmonella enterica subsp. e... gi\|213583607 - gi\|213583607\|ref\|ZP_03365433.1\| hypothetical protein SentesTyph_21285 [Salmonella enterica subsp. en... gi\|198244559, gi... - gi\|198244559\|ref\|YP_002215799.1\| hypothetical protein SeD_A2019 [Salmonella enterica subsp. enterica... gi\|204927820, gi... - gi\|204927820\|ref\|ZP_03219021.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205352950, gi... - gi\|205352950\|ref\|YP_002226751.1\| hypothetical protein SG1791 [Salmonella enterica subsp. enterica se... gi\|206708969, gi... - gi\|207857166\|ref\|YP_002243817.1\| hypothetical protein SEN1718 [Salmonella enterica subsp. enterica s...	157.0	[0..1]	[94..1]
lcl\|NC_016856.1_... - [gene=ydiZ] [protein=putative cytoplasmic protein] [protein_id=YP_005237184.1] [location=complement(... gi\|205329775, gi... - gi\|205329775\|gb\|EDZ16539.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|16764676, gi\|... - gi\|16764676\|ref\|NP_460291.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419843\|... gi\|197264177, gi... - gi\|197264177\|ref\|ZP_03164251.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se...	155.0	[0..1]	[94..1]
gi\|197362612, gi... - gi\|197362612\|ref\|YP_002142249.1\| hypothetical protein SSPA1410 [Salmonella enterica subsp. enterica ... gi\|56413689, gi\|... - gi\|56413689\|ref\|YP_150764.1\| hypothetical protein SPA1519 [Salmonella enterica subsp. enterica serov...	155.0	[0..1]	[94..1]
gi\|75513779 - gi\|75513779\|ref\|ZP_00736155.1\| COG3343: DNA-directed RNA polymerase, delta subunit [Escherichia coli...	144.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGDLVRYV ITVMLHEDTL TEINELNNYL TRDGFLLTMT DDEGNIHELG TNTFGLISTQ  60
   61 SEEEIRELVS GLTQSATGKD PEITITTWEE WNSNRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits