YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIT_ECOLI
Organism:	Escherichia coli
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|241884286, gi... - gi\|241903375\|ref\|ZP_04788100.1\| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finn... gi\|167037865, gi... - gi\|76795774\|ref\|ZP_00778145.1\| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus ATCC 332...	93.0	[0..13]	[82..511]
gi\|223489899, gi... - gi\|254478307\|ref\|ZP_05091687.1\| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydi... gi\|20807374, gi\|... - gi\|20807374\|ref\|NP_622545.1\| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoana... gi\|20807374 - gi\|20807374\|ref\|NP_622545.1\| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoana...	93.0	[0..13]	[82..511]
gi\|70606156, gi\|... - gi\|70606156\|ref\|YP_255026.1\| ferredoxin-like protein [Sulfolobus acidocaldarius DSM 639], gi\|6856680...	92.0	[0..7]	[97..1]
gi\|89951244, gi\|... - gi\|90021644\|ref\|YP_527471.1\| S6 modification enzyme RimK [Saccharophagus degradans 2-40], gi\|8995124...	92.0	[0..2]	[94..439]
gi\|88778550, gi\|... - gi\|88798787\|ref\|ZP_01114370.1\| dehydrogenase [Reinekea sp. MED297], gi\|88778550\|gb\|EAR09742.1\| dehyd...	92.0	[0..2]	[94..444]
gi\|110341849, gi... - gi\|110640257\|ref\|YP_667985.1\| ferredoxin-like protein [Escherichia coli 536], gi\|110341849\|gb\|ABG680... FIXX_ECO57 - Ferredoxin-like protein FixX OS=Escherichia coli O157:H7 GN=fixX PE=3 SV=1 gi\|91070679, gi\|... - gi\|91209105\|ref\|YP_539091.1\| putative ferredoxin [Escherichia coli UTI89], gi\|91070679\|gb\|ABE05560.1... FIXX_ECOL6 - Ferredoxin-like protein FixX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fixX ... gi\|13359503, gi\|... - gi\|15829301\|ref\|NP_308074.1\| putative ferredoxin [Escherichia coli O157:H7 str. Sakai], gi\|13359503\|... gi\|15799727, gi\|... - gi\|15799727\|ref\|NP_285739.1\| putative ferredoxin [Escherichia coli O157:H7 EDL933], gi\|12512734\|gb\|A... EG11565 - putative 4Fe-4S ferredoxin-type protein / Related to carnitine metabolism gi\|82775446, gi\|... - gi\|82775446\|ref\|YP_401793.1\| putative ferredoxin [Shigella dysenteriae Sd197], gi\|81239594\|gb\|ABB603... gi\|254791181, gi... - gi\|254791181\|ref\|YP_003076018.1\| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli O157:H7 ... gi\|89106928, gi\|... - gi\|89106928\|ref\|AP_000708.1\| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K-12 su... gi\|254160169, gi... - gi\|254160169\|ref\|YP_003043277.1\| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli B str. R... gi\|75515632, gi\|... - gi\|75515632\|ref\|ZP_00737789.1\| COG2440: Ferredoxin-like protein [Escherichia coli 53638], gi\|1884933... gi\|254037461, gi... - gi\|254037461\|ref\|ZP_04871538.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684056... gi\|74310664, gi\|... - gi\|74310664\|ref\|YP_309083.1\| putative ferredoxin [Shigella sonnei Ss046], gi\|73854141\|gb\|AAZ86848.1\|... gi\|253774924, gi... - gi\|254286972\|ref\|YP_003052720.1\| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli BL21(DE3... gi\|251783610, gi... - gi\|251783610\|ref\|YP_002997914.1\| hypothetical protein B21_00047 [Escherichia coli BL21], gi\|24237588... gi\|238899449, gi... - gi\|238899449\|ref\|YP_002925245.1\| putative 4Fe-4S ferredoxin-type protein [Escherichia coli BW2952], ... gi\|226902100, gi... - gi\|237704188\|ref\|ZP_04534669.1\| ferredoxin-like protein fixX [Escherichia sp. 3_2_53FAA], gi\|2269021... gi\|227837886, gi... - gi\|227885057\|ref\|ZP_04002862.1\| ferredoxin [Escherichia coli 83972], gi\|227837886\|gb\|EEJ48352.1\| fer... gi\|194421372, gi... - gi\|83584911\|ref\|ZP_00923568.1\| COG2440: Ferredoxin-like protein [Escherichia coli 101-1], gi\|1944396... gi\|75194265, gi\|... - gi\|75194265\|ref\|ZP_00704335.1\| COG2440: Ferredoxin-like protein [Escherichia coli HS], gi\|157159515\|... gi\|191174110, gi... - gi\|75237163\|ref\|ZP_00721211.1\| COG2440: Ferredoxin-like protein [Escherichia coli F11], gi\|191174110... gi\|193066208, gi... - gi\|75255699\|ref\|ZP_00727465.1\| COG2440: Ferredoxin-like protein [Escherichia coli E22], gi\|193066208... gi\|194429879, gi... - gi\|75208900\|ref\|ZP_00709177.1\| COG2440: Ferredoxin-like protein [Escherichia coli B171], gi\|19442987... gi\|75227571, gi\|... - gi\|75227571\|ref\|ZP_00714326.1\| COG2440: Ferredoxin-like protein [Escherichia coli B7A], gi\|191169143... FIXX_ECOLI - Ferredoxin-like protein fixX - Escherichia coli EG11565 - putative 4Fe-4S ferredoxin-type protein / Related to carnitine metabolism gi\|124531322, gi... - gi\|124531322\|ref\|ZP_01701650.1\| putative ferredoxin [Escherichia coli B], gi\|124498622\|gb\|EAY46129.1... gi\|168766736, gi... - gi\|189364105\|gb\|EDU82524.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|168776964, gi... - gi\|187767734\|gb\|EDU31578.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|189000764, gi... - gi\|189000764\|gb\|EDU69750.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|168785099, gi... - gi\|189375114\|gb\|EDU93530.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC869], gi\|168785... gi\|189376002, gi... - gi\|189376002\|gb\|EDU94418.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC508], gi\|168801... gi\|170021598, gi... - gi\|170021598\|ref\|YP_001726552.1\| putative ferredoxin [Escherichia coli ATCC 8739], gi\|169756526\|gb\|A... gi\|170079707, gi... - gi\|170079707\|ref\|YP_001729027.1\| 4Fe-4S ferredoxin-type protein [Escherichia coli str. K-12 substr. ... gi\|170518666, gi... - gi\|170680948\|ref\|YP_001742163.1\| ferredoxin homolog FixX [Escherichia coli SMS-3-5], gi\|170518666\|gb... FIXX_ECOL6 - Ferredoxin-like protein fixX OS=Escherichia coli O6 GN=fixX PE=3 SV=1 gi\|168751698, gi... - gi\|188014316\|gb\|EDU52438.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4113], gi\|16875... gi\|189356042, gi... - gi\|189356042\|gb\|EDU74461.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|168762808, gi... - gi\|189366922\|gb\|EDU85338.1\| putative ferredoxin [Escherichia coli O157:H7 str. EC4501], gi\|168762808... gi\|218363753, gi... - gi\|218556984\|ref\|YP_002389897.1\| putative 4Fe-4S ferredoxin [Escherichia coli S88], gi\|218363753\|emb... gi\|218687920, gi... - gi\|218687920\|ref\|YP_002396132.1\| putative 4Fe-4S ferredoxin [Escherichia coli ED1a], gi\|218425484\|em... gi\|218350248, gi... - gi\|218693516\|ref\|YP_002401183.1\| putative 4Fe-4S ferredoxin [Escherichia coli 55989], gi\|218350248\|e... gi\|218368450, gi... - gi\|218698464\|ref\|YP_002406093.1\| putative 4Fe-4S ferredoxin [Escherichia coli IAI39], gi\|218368450\|e... gi\|218703305, gi... - gi\|218703305\|ref\|YP_002410824.1\| putative 4Fe-4S ferredoxin [Escherichia coli UMN026], gi\|218430402\|... gi\|194434541, gi... - gi\|194434541\|ref\|ZP_03066799.1\| ferredoxin homolog FixX [Shigella dysenteriae 1012], gi\|194417194\|gb... gi\|195937718 - gi\|195937718\|ref\|ZP_03083100.1\| 4Fe-4S ferredoxin-type protein [Escherichia coli O157:H7 str. EC4024... gi\|208728168, gi... - gi\|208808367\|ref\|ZP_03250704.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|208812931, gi... - gi\|208812931\|ref\|ZP_03254260.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|208739243, gi... - gi\|208819120\|ref\|ZP_03259440.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209397556, gi... - gi\|209397556\|ref\|YP_002268652.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|215485206, gi... - gi\|215485206\|ref\|YP_002327637.1\| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli O127:H6 ... gi\|217325682, gi... - gi\|217325682\|ref\|ZP_03441766.1\| ferredoxin homolog FixX [Escherichia coli O157:H7 str. TW14588], gi\|...	91.0	[0..4]	[97..2]
gi\|83646662, gi\|... - gi\|83646662\|ref\|YP_435097.1\| dehydrogenase [Hahella chejuensis KCTC 2396], gi\|83634705\|gb\|ABC30672.1...	91.0	[0..2]	[94..445]
gi\|82499409, gi\|... - gi\|82499409\|ref\|ZP_00884855.1\| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Caldice...	90.0	[0..13]	[82..512]
gi\|78693822, gi\|... - gi\|78693822\|ref\|ZP_00858336.1\| Electron-transferring-flavoprotein dehydrogenase [Bradyrhizobium sp. ...	90.0	[0..1]	[95..445]
gi\|30039853, gi\|... - gi\|30061611\|ref\|NP_835782.1\| putative ferredoxin [Shigella flexneri 2a str. 2457T], gi\|30039853\|gb\|A... gi\|24050242, gi\|... - gi\|24111490\|ref\|NP_706000.1\| putative ferredoxin [Shigella flexneri 2a str. 301], gi\|24050242\|gb\|AAN... gi\|192955713, gi... - gi\|75234145\|ref\|ZP_00718549.1\| COG2440: Ferredoxin-like protein [Escherichia coli E110019], gi\|19307... gi\|157156329, gi... - gi\|75189148\|ref\|ZP_00702415.1\| COG2440: Ferredoxin-like protein [Escherichia coli E24377A], gi\|15715... gi\|209917236, gi... - gi\|209917236\|ref\|YP_002291320.1\| putative ferredoxin [Escherichia coli SE11], gi\|209910495\|dbj\|BAG75... gi\|218359397, gi... - gi\|218552629\|ref\|YP_002385542.1\| putative 4Fe-4S ferredoxin [Escherichia coli IAI1], gi\|218359397\|em... FIXX_SHIFL - Ferredoxin-like protein FixX OS=Shigella flexneri GN=fixX PE=3 SV=1 gi\|110613658, gi... - gi\|110804110\|ref\|YP_687630.1\| putative ferredoxin [Shigella flexneri 5 str. 8401], gi\|110613658\|gb\|A...	89.0	[0..4]	[97..2]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNATVNVD IKLGVNKFHV DEGHPHIILA ENPDINEFHK LMKACPAGLY KQDDAGNIHF  60
   61 DSAGCLECGT CRVLCGNTIL EQWQYPAGTF GIDFRYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1hfeL
Description:	Fe-only hydrogenase larger subunit, C-domain; Fe-only hydrogenase larger subunit, N-domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits