YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHZ_ECOLI
Organism:	Escherichia coli
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82543955, gi\|... - gi\|82543955\|ref\|YP_407902.1\| hypothetical protein SBO_1455 [Shigella boydii Sb227], gi\|81245366\|gb\|A... gi\|187733648, gi... - gi\|75175204\|ref\|ZP_00695522.1\| hypothetical protein SboyB_01004667 [Shigella boydii BS512], gi\|18773...	108.0	[0..1]	[69..1]
gi\|62127612, gi\|... - gi\|62179979\|ref\|YP_216396.1\| hypothetical protein SC1409 [Salmonella enterica subsp. enterica serova...	107.0	[0..1]	[69..18]
gi\|167995018, gi... - gi\|205327222\|gb\|EDZ13986.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167551646, gi... - gi\|205323636\|gb\|EDZ11475.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197287988, gi... - gi\|197287988\|gb\|EDY27375.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205332389, gi... - gi\|205332389\|gb\|EDZ19153.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161363562, gi... - gi\|161614198\|ref\|YP_001588163.1\| hypothetical protein SPAB_01940 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=orf70] [protein=hypothetical protein] [protein_id=YP_005237256.1] [location=1483796..1484008] gi\|205352896, gi... - gi\|205352896\|ref\|YP_002226697.1\| hypothetical protein SG1728 [Salmonella enterica subsp. enterica se... gi\|204927735, gi... - gi\|204927735\|ref\|ZP_03218936.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|213028289 - gi\|213028289\|ref\|ZP_03342736.1\| hypothetical protein Salmonelentericaenterica_40710 [Salmonella ente... gi\|207857106, gi... - gi\|207857106\|ref\|YP_002243757.1\| hypothetical protein SEN1657 [Salmonella enterica subsp. enterica s... gi\|197094042, gi... - gi\|197362565\|ref\|YP_002142202.1\| hypothetical protein SSPA1363 [Salmonella enterica subsp. enterica ... gi\|197242335, gi... - gi\|197264080\|ref\|ZP_03164154.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200390979, gi... - gi\|200390979\|ref\|ZP_03217590.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|238913207 - gi\|238913207\|ref\|ZP_04657044.1\| hypothetical protein SentesTe_19055 [Salmonella enterica subsp. ente... gi\|197937996, gi... - gi\|198243480\|ref\|YP_002215740.1\| hypothetical protein SeD_A1954 [Salmonella enterica subsp. enterica... gi\|194456284, gi... - gi\|194469920\|ref\|ZP_03075904.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194409256, gi... - gi\|194450952\|ref\|YP_002045393.1\| hypothetical protein SeHA_C1522 [Salmonella enterica subsp. enteric... gi\|197249940, gi... - gi\|197249940\|ref\|YP_002146652.1\| hypothetical protein SeAg_B1783 [Salmonella enterica subsp. enteric... gi\|194734444, gi... - gi\|194734444\|ref\|YP_002114403.1\| hypothetical protein SeSA_A1485 [Salmonella enterica subsp. enteric... gi\|168463204, gi... - gi\|195634009\|gb\|EDX52361.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205339339, gi... - gi\|205339339\|gb\|EDZ26103.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194402148, gi... - gi\|194443485\|ref\|YP_002040642.1\| hypothetical protein SNSL254_A1501 [Salmonella enterica subsp. ente... gi\|205341337, gi... - gi\|205341337\|gb\|EDZ28101.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213854962 - gi\|213854962\|ref\|ZP_03383202.1\| hypothetical protein SentesT_13117 [Salmonella enterica subsp. enter... gi\|213610048 - gi\|213610048\|ref\|ZP_03369874.1\| hypothetical protein SentesTyp_05817 [Salmonella enterica subsp. ent... gi\|224468628, gi... - gi\|224584101\|ref\|YP_002637899.1\| hypothetical protein SPC_2341 [Salmonella enterica subsp. enterica ... gi\|213418129 - gi\|213418129\|ref\|ZP_03351195.1\| hypothetical protein Salmonentericaenterica_09523 [Salmonella enteri... gi\|213051570 - gi\|213051570\|ref\|ZP_03344448.1\| hypothetical protein Salmoneentericaenterica_00720 [Salmonella enter... gi\|213586495 - gi\|213586495\|ref\|ZP_03368321.1\| hypothetical protein SentesTyph_36575 [Salmonella enterica subsp. en... YDHZ_SALTY - Uncharacterized protein ydhZ OS=Salmonella typhimurium GN=ydhZ PE=4 SV=1 gi\|213428556 - gi\|213428556\|ref\|ZP_03361306.1\| hypothetical protein SentesTyphi_25331 [Salmonella enterica subsp. e... YDHZ_SALTI - Uncharacterized protein YdhZ OS=Salmonella typhi GN=ydhZ PE=4 SV=1 YDHZ_SALTY - Uncharacterized protein YdhZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ydhZ... YDHZ_SALTY - Uncharacterized protein ydhZ OS=Salmonella typhimurium GN=ydhZ PE=4 SV=1 YDHZ_SALTI - Uncharacterized protein ydhZ OS=Salmonella typhi GN=ydhZ PE=4 SV=1 gi\|29141717, gi\|... - gi\|29141717\|ref\|NP_805059.1\| hypothetical protein t1256 [Salmonella enterica subsp. enterica serovar... gi\|16760523 - gi\|16760523\|ref\|NP_456140.1\| hypothetical protein STY1732 [Salmonella enterica subsp. enterica serov... gi\|56127898, gi\|... - gi\|56413641\|ref\|YP_150716.1\| hypothetical protein SPA1465 [Salmonella enterica subsp. enterica serov...	107.0	[0..1]	[69..1]
gi\|217328852, gi... - gi\|217328852\|ref\|ZP_03444933.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209400728, gi... - gi\|209400728\|ref\|YP_002270744.1\| hypothetical protein ECH74115_2389 [Escherichia coli O157:H7 str. E... gi\|208739372, gi... - gi\|208819249\|ref\|ZP_03259569.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208816893, gi... - gi\|208816893\|ref\|ZP_03258013.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208724891, gi... - gi\|208810375\|ref\|ZP_03252251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|194440075, gi... - gi\|194440075\|ref\|ZP_03072130.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442099... gi\|194430707, gi... - gi\|194430707\|ref\|ZP_03063137.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194411250... gi\|193071587, gi... - gi\|193071587\|ref\|ZP_03052494.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192955... gi\|192927408, gi... - gi\|193064921\|ref\|ZP_03045997.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927408\|... gi\|190906312, gi... - gi\|191173470\|ref\|ZP_03034998.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906312\|... gi\|191169561, gi... - gi\|191169561\|ref\|ZP_03031286.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190900397\|... gi\|75195752 - gi\|75195752\|ref\|ZP_00705822.1\| hypothetical protein EcolH_01001551 [Escherichia coli HS] gi\|189406312, gi... - gi\|189406312\|ref\|ZP_02827708.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|189370040, gi... - gi\|189405451\|ref\|ZP_02815509.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189404541, gi... - gi\|189404541\|ref\|ZP_02790140.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189403631, gi... - gi\|189403631\|ref\|ZP_02796667.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189354241, gi... - gi\|189402691\|ref\|ZP_02784145.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189010717, gi... - gi\|189010717\|ref\|ZP_02808956.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|188025285, gi... - gi\|188025285\|ref\|ZP_02777384.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|187776486, gi... - gi\|187776486\|ref\|ZP_02803038.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|170683892, gi... - gi\|170683892\|ref\|YP_001743579.1\| hypothetical protein EcSMS35_1521 [Escherichia coli SMS-3-5], gi\|17...	87.0	[0..14]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNRTKEDEL YREMCRVVGK VVLEMRDLGQ EPKHIVIAGV LRTALANKRI QRSELEKQAM  60
   61 ETVINALVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.909	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits