YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHW_ECOLI
Organism:	Escherichia coli
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227885912, gi... - gi\|227885912\|ref\|ZP_04003717.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783709... gi\|218689615, gi... - gi\|218689615\|ref\|YP_002397827.1\| hypothetical protein ECED1_1870 [Escherichia coli ED1a], gi\|2184271... gi\|26108324, gi\|... - gi\|26247921\|ref\|NP_753961.1\| hypothetical protein c2066 [Escherichia coli CFT073], gi\|26108324\|gb\|AA... gi\|75238770 - gi\|75238770\|ref\|ZP_00722754.1\| hypothetical protein EcolF_01003289 [Escherichia coli F11]	354.0	[0..1]	[215..1]
gi\|110641793, gi... - gi\|110641793\|ref\|YP_669523.1\| hypothetical protein ECP_1619 [Escherichia coli 536], gi\|110343385\|gb\|... gi\|191173454, gi... - gi\|191173454\|ref\|ZP_03034982.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906296\|... gi\|215486847, gi... - gi\|215486847\|ref\|YP_002329278.1\| hypothetical protein E2348C_1757 [Escherichia coli O127:H6 str. E23...	349.0	[0..4]	[215..1]
gi\|15831633, gi\|... - gi\|15831633\|ref\|NP_310406.1\| hypothetical protein ECs2379 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254592689, gi... - gi\|254793289\|ref\|YP_003078126.1\| hypothetical protein ECSP_2239 [Escherichia coli O157:H7 str. TW143... gi\|15831633, gi\|... - gi\|15831633\|ref\|NP_310406.1\| hypothetical protein ECs2379 [Escherichia coli O157:H7], gi\|13361846\|db... gi\|209769260, gi... - pir\|\|G85774 hypothetical protein Z2700 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12515671, gi\|... - gi\|15802084\|ref\|NP_288106.1\| hypothetical protein Z2700 [Escherichia coli O157:H7 EDL933], gi\|125156...	344.0	[0..1]	[215..1]
gi\|24113060, gi\|... - ref\|NP_707570.1\| hypothetical protein SF1700 [Shigella flexneri 2a str. 301], gb\|AAN43277.1\| orf, c... gi\|73855480, gi\|... - gi\|74312003\|ref\|YP_310422.1\| hypothetical protein SSON_1484 [Shigella sonnei Ss046], gi\|73855480\|gb\|... gi\|81245371, gi\|... - gi\|82543960\|ref\|YP_407907.1\| hypothetical protein SBO_1460 [Shigella boydii Sb227], gi\|81245371\|gb\|A... gi\|110615196, gi... - gi\|110805648\|ref\|YP_689168.1\| hypothetical protein SFV_1694 [Shigella flexneri 5 str. 8401], gi\|1106...	344.0	[0..1]	[215..1]
gi\|81241296, gi\|... - gi\|82777148\|ref\|YP_403497.1\| hypothetical protein SDY_1900 [Shigella dysenteriae Sd197], gi\|81241296...	343.0	[0..1]	[215..1]
gi\|188494596, gi... - gi\|75512896\|ref\|ZP_00735377.1\| hypothetical protein Ecol5_01002878 [Escherichia coli 53638], gi\|1884... gi\|75227077 - gi\|75227077\|ref\|ZP_00713900.1\| hypothetical protein EcolB7_01004458 [Escherichia coli B7A] gi\|75214846 - gi\|75214846\|ref\|ZP_00713329.1\| hypothetical protein EcolE1_01004505 [Escherichia coli E110019] gi\|157066817, gi... - gi\|75195749\|ref\|ZP_00705819.1\| hypothetical protein EcolH_01001548 [Escherichia coli HS], gi\|1571611... gi\|157155753, gi... - gi\|75190710\|ref\|ZP_00703977.1\| hypothetical protein EcolE_01004021 [Escherichia coli E24377A], gi\|15...	343.0	[0..1]	[215..1]
gi\|218695233, gi... - gi\|218695233\|ref\|YP_002402900.1\| hypothetical protein EC55989_1839 [Escherichia coli 55989], gi\|2183... gi\|209918985, gi... - gi\|209918985\|ref\|YP_002293069.1\| hypothetical protein ECSE_1794 [Escherichia coli SE11], gi\|20991224... gi\|75257089 - gi\|75257089\|ref\|ZP_00728649.1\| hypothetical protein EcolE2_01003140 [Escherichia coli E22] gi\|75208169 - gi\|75208169\|ref\|ZP_00708547.1\| hypothetical protein EcolB_01004550 [Escherichia coli B171]	342.0	[0..1]	[215..1]
gi\|226900375, gi... - gi\|237705618\|ref\|ZP_04536099.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91072459, gi\|... - gi\|91210885\|ref\|YP_540871.1\| hypothetical protein UTI89_C1864 [Escherichia coli UTI89], gi\|91072459\|... gi\|117623853, gi... - gi\|117623853\|ref\|YP_852766.1\| hypothetical protein APECO1_751 [Escherichia coli APEC O1], gi\|1155129...	342.0	[0..1]	[215..1]
gi\|187427733, gi... - gi\|75175201\|ref\|ZP_00695519.1\| hypothetical protein SboyB_01004664 [Shigella boydii BS512], gi\|18773...	339.0	[0..1]	[215..1]
gi\|56479950, gi\|... - gi\|56479950\|ref\|NP_707570.2\| hypothetical protein SF1700 [Shigella flexneri 2a str. 301], gi\|5638350... gi\|30063185, gi\|... - gi\|30063185\|ref\|NP_837356.1\| hypothetical protein S1832 [Shigella flexneri 2a str. 2457T], gi\|300414...	337.0	[0..4]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKMNHQDEL PLAKVSEVDE AKRQWLQGMR HPVDTVTEPE PAEILAEFIR QHSAAGQLVA  60
   61 RAVFLSPPYL VAEEELSVLL ESIKQNGDYA DIACLTGSKD DYYYSTQAMS ENYAAMSLQV 120
  121 VEQDICRAIA HAVRFECQTY PRPYKVAMLM QAPYYFQEAQ IEAAIAAMDV APEYADIRQV 180
  181 ESSTAVLYLF SERFMTYGKA YGLCEWFEVE QFQNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits