YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHR_ECOLI
Organism:	Escherichia coli
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46916534, gi\|... - gi\|54303106\|ref\|YP_133099.1\| hypothetical protein PBPRB1432 [Photobacterium profundum SS9], gi\|46916...	166.0	[0..1]	[100..14]
gi\|90412360, gi\|... - gi\|90412360\|ref\|ZP_01220364.1\| hypothetical protein P3TCK_11264 [Photobacterium profundum 3TCK], gi\|...	164.0	[0..1]	[100..1]
gi\|91191951, gi\|... - gi\|91223138\|ref\|ZP_01258404.1\| hypothetical protein V12G01_04826 [Vibrio alginolyticus 12G01], gi\|91...	161.0	[0..1]	[100..1]
gi\|28901461, gi\|... - gi\|28901461\|ref\|NP_801116.1\| hypothetical protein VPA1606 [Vibrio parahaemolyticus RIMD 2210633], gi... gi\|28810008 - gi\|28810008\|dbj\|BAC62949.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153837283, gi... - gi\|153837283\|ref\|ZP_01989950.1\| protein YdhR [Vibrio parahaemolyticus AQ3810], gi\|149749423\|gb\|EDM60...	159.0	[0..1]	[101..1]
gi\|76874896, gi\|... - gi\|77359985\|ref\|YP_339560.1\| hypothetical protein PSHAa1039 [Pseudoalteromonas haloplanktis TAC125],...	158.0	[0..1]	[100..1]
gi\|87119063, gi\|... - gi\|87119063\|ref\|ZP_01074961.1\| hypothetical protein MED121_12375 [Marinomonas sp. MED121], gi\|861654...	157.0	[0..1]	[100..1]
gi\|83754036, gi\|... - gi\|83754037\|pdb\|2ASY\|B Chain B, Solution Structure Of Ydhr Protein From Escherichia Coli, gi\|8375403...	156.0	[0..1]	[101..23]
gi\|84378449, gi\|... - gi\|84386643\|ref\|ZP_00989669.1\| hypothetical protein V12B01_00897 [Vibrio splendidus 12B01], gi\|84378... gi\|85835231, gi\|... - gi\|86146981\|ref\|ZP_01065299.1\| hypothetical protein MED222_19804 [Vibrio sp. MED222], gi\|85835231\|gb...	156.0	[0..3]	[100..2]
gi\|194709405, gi... - gi\|194733903\|ref\|YP_002116403.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|195632271, gi... - gi\|195632271\|gb\|EDX50755.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|56415379, gi\|... - gi\|56415379\|ref\|YP_152454.1\| hypothetical protein SPA3327 [Salmonella enterica subsp. enterica serov... gi\|168260825, gi... - gi\|205350242\|gb\|EDZ36873.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|62129598, gi\|... - gi\|62181965\|ref\|YP_218382.1\| hypothetical protein SC3395 [Salmonella enterica subsp. enterica serova... gi\|168235047, gi... - gi\|197291590\|gb\|EDY30942.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|161616492, gi... - gi\|161616492\|ref\|YP_001590456.1\| hypothetical protein SPAB_04307 [Salmonella enterica subsp. enteric... gi\|224469784, gi... - gi\|224585256\|ref\|YP_002639055.1\| hypothetical protein SPC_3530 [Salmonella enterica subsp. enterica ... gi\|204928566, gi... - gi\|204928566\|ref\|ZP_03219765.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Javiana st... gi\|200388370, gi... - gi\|200388370\|ref\|ZP_03214982.1\| protein YdhR [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197364309, gi... - gi\|197364309\|ref\|YP_002143946.1\| hypothetical protein SSPA3105 [Salmonella enterica subsp. enterica ...	156.0	[0..2]	[100..3]
gi\|72496015, gi\|... - gi\|73663500\|ref\|YP_302281.1\| hypothetical protein SSP2191 [Staphylococcus saprophyticus subsp. sapro...	155.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLQLHFA FNGPFGDAMA EQLKPLAESI NQEPGFLWKV WTESEKNHEA GGIYLFTDEK  60
   61 SALAYLEKHT ARLKNLGVEE VVAKVFDVNE PLSQINQAKL A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1wd6A
Description:	crystal structure of JW1657 from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits