YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHH_ECOLI, ANMK...
Organism:	Escherichia coli
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHH_ECOLI, ANMK....

Description	E-value	Query Range	Subject Range
ANMK_SHIF8 - Anhydro-N-acetylmuramic acid kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=anmK PE=3 SV=1	568.0	[0..1]	[368..1]
ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /... ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii GN=anmK PE=3 SV=1	566.0	[0..1]	[366..3]
gi\|24113032, gi\|... - gi\|24113032\|ref\|NP_707542.1\| anhydro-N-acetylmuramic acid kinase [Shigella flexneri 2a str. 301], gi... gi\|30063157, gi\|... - gi\|30063157\|ref\|NP_837328.1\| anhydro-N-acetylmuramic acid kinase [Shigella flexneri 2a str. 2457T], ... ANMK_SHIFL - Anhydro-N-acetylmuramic acid kinase OS=Shigella flexneri GN=anmK PE=3 SV=1	565.0	[0..1]	[368..1]
gi\|22125855, gi\|... - gi\|22125855\|ref\|NP_669278.1\| hypothetical protein y1963 [Yersinia pestis KIM], gi\|21958787\|gb\|AAM855... gi\|45436813, gi\|... - gi\|45441950\|ref\|NP_993489.1\| hypothetical protein YP_2158 [Yersinia pestis biovar Microtus str. 9100... gi\|162354585, gi... - gi\|162421770\|ref\|YP_001606968.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis Angola], gi\|16...	562.0	[0..1]	[368..15]
gi\|165938545, gi... - gi\|89103785\|ref\|ZP_01176349.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|117673417, gi... - gi\|77629357\|ref\|ZP_00791943.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|166207663, gi... - gi\|166210483\|ref\|ZP_02236518.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|167400920, gi... - gi\|167400920\|ref\|ZP_02306426.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|165926440, gi... - gi\|165926440\|ref\|ZP_02222272.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|165990446, gi... - gi\|166010744\|ref\|ZP_02231642.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|166958979, gi... - gi\|167422167\|ref\|ZP_02313920.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|167425060, gi... - gi\|167425060\|ref\|ZP_02316813.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Mediaeva... gi\|77633731 - gi\|77633731\|ref\|ZP_00795850.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	559.0	[0..1]	[368..8]
ANMK_SALPB - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=anmK ... ANMK_SALPB - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=anmK ... gi\|16760467 - gi\|16760467\|ref\|NP_456084.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enteric... ANMK_SALTI - Anhydro-N-acetylmuramic acid kinase OS=Salmonella typhi GN=anmK PE=3 SV=1 gi\|29137401, gi\|... - gi\|29141773\|ref\|NP_805115.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enteric... ANMK_SALTI - Anhydro-N-acetylmuramic acid kinase OS=Salmonella typhi GN=anmK PE=3 SV=1 ANMK_SALCH - Anhydro-N-acetylmuramic acid kinase OS=Salmonella choleraesuis GN=anmK PE=3 SV=1 ANMK_SALHS - Anhydro-N-acetylmuramic acid kinase OS=Salmonella heidelberg (strain SL476) GN=anmK PE=3 SV=1 gi\|168819196, gi... - gi\|205343693\|gb\|EDZ30457.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... gi\|168463143, gi... - gi\|195634038\|gb\|EDX52390.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... gi\|168240961, gi... - gi\|205339542\|gb\|EDZ26306.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... gi\|204322845, gi... - gi\|204927503\|ref\|ZP_03218704.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... gi\|200390481, gi... - gi\|200390481\|ref\|ZP_03217092.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... ANMK_SALCH - Anhydro-N-acetylmuramic acid kinase OS=Salmonella choleraesuis GN=anmK PE=3 SV=1 ANMK_SALCH - Anhydro-N-acetylmuramic acid kinase OS=Salmonella choleraesuis (strain SC-B67) GN=anmK PE=3 SV=1 ANMK_SALA4 - Anhydro-N-acetylmuramic acid kinase OS=Salmonella agona (strain SL483) GN=anmK PE=3 SV=1 gi\|238913153 - gi\|238913153\|ref\|ZP_04656990.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... ANMK_SALSV - Anhydro-N-acetylmuramic acid kinase OS=Salmonella schwarzengrund (strain CVM19633) GN=anmK PE=3 SV=1 gi\|197291012, gi... - gi\|197291012\|gb\|EDY30365.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... gi\|167551584, gi... - gi\|205323580\|gb\|EDZ11419.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. enterica... gi\|213649179 - gi\|213649179\|ref\|ZP_03379232.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... gi\|213586448 - gi\|213586448\|ref\|ZP_03368274.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... gi\|213425991 - gi\|213425991\|ref\|ZP_03358741.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... gi\|213051640 - gi\|213051640\|ref\|ZP_03344518.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... ANMK_SALPC - Anhydro-N-acetylmuramic acid kinase OS=Salmonella paratyphi C (strain RKS4594) GN=anmK PE=3 SV=1 gi\|214000284 - gi\|214000284\|ref\|ZP_03411019.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente... gi\|213857953 - gi\|213857953\|ref\|ZP_03384924.1\| anhydro-N-acetylmuramic acid kinase [Salmonella enterica subsp. ente...	559.0	[0..1]	[369..1]
ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida GN=anmK PE=3 SV=1 ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida (strain Pm70) GN=anmK PE=3 SV=1	558.0	[0..1]	[366..1]
gi\|77979551 - gi\|77979551\|ref\|ZP_00834969.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	558.0	[0..1]	[368..8]
ANMK_YERPA - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=anmK PE=3 SV=... ANMK_YERPP - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pestis (strain Pestoides F) GN=anmK PE=3 SV=1 ANMK_YERPS - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pseudotuberculosis GN=anmK PE=3 SV=1 gi\|229701942, gi... - gi\|229895054\|ref\|ZP_04510231.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis Pestoides A], g... gi\|229837894, gi... - gi\|229837894\|ref\|ZP_04458053.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|229688501, gi... - gi\|229898457\|ref\|ZP_04513603.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... ANMK_YERPN - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=anmK PE=3 SV... ANMK_YERP3 - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) G... gi\|149365717, gi... - gi\|149365717\|ref\|ZP_01887752.1\| hypothetical protein YPE_0891 [Yersinia pestis CA88-4125], gi\|149292... ANMK_YERPE - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pestis GN=anmK PE=3 SV=1 gi\|167470851 - gi\|167470851\|ref\|ZP_02335555.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis FV-1] ANMK_YERPY - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=an... gi\|115348074, gi... - gi\|218929463\|ref\|YP_002347338.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis CO92], gi\|1612... ANMK_YERPS - Anhydro-N-acetylmuramic acid kinase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=an... gi\|161484814 - gi\|161484814\|ref\|NP_669278.2\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis KIM] gi\|161511371 - gi\|161511371\|ref\|NP_993489.2\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Microtus s...	557.0	[0..1]	[368..1]
gi\|83587975, gi\|... - gi\|83587975\|ref\|ZP_00926601.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|254161702, gi... - gi\|254161702\|ref\|YP_003044810.1\| anhydro-N-acetylmuramic acid kinase [Escherichia coli B str. REL606... ANMK_SHIB3 - Anhydro-N-acetylmuramic acid kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=a... gi\|253773401, gi... - gi\|254288491\|ref\|YP_003054239.1\| anhydro-N-acetylmuramic acid kinase [Escherichia coli BL21(DE3)], g... ANMK_SHISS - Anhydro-N-acetylmuramic acid kinase OS=Shigella sonnei (strain Ss046) GN=anmK PE=3 SV=1 ANMK_SHIDS - Anhydro-N-acetylmuramic acid kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=anmK PE=3 S... ANMK_ECOHS - Anhydro-N-acetylmuramic acid kinase OS=Escherichia coli O9:H4 (strain HS) GN=anmK PE=3 SV=1 gi\|190904079, gi... - gi\|75230911\|ref\|ZP_00717360.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|124499977, gi... - gi\|124529203\|ref\|ZP_01700278.1\| protein of unknown function UPF0075 [Escherichia coli B], gi\|1244999... ANMK_ECOLU - Anhydro-N-acetylmuramic acid kinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=anmK ... ANMK_ECOLC - Anhydro-N-acetylmuramic acid kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=an... gi\|251785098, gi... - gi\|251785098\|ref\|YP_002999402.1\| hypothetical protein B21_01600 [Escherichia coli BL21], gi\|24237737...	557.0	[0..1]	[369..1]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGRFIGVM SGTSLDGVDV VLATIDEHRV AQLASLSWPI PVSLKQAVLD ICQGQQLTLS  60
   61 QFGQLDTQLG QLFADAVNAL LKEQNLQARD IVAIGCHGQT VWHEPTGVAP HTLQIGDNNQ 120
  121 IVARTGITVV GDFRRRDIAL GGQGAPLVPA FHHALLAHPT ERRMVLNIGG IANLSLLIPG 180
  181 QPVGGYDTGP GNMLMDAWIW RQAGKPYDKD AEWARAGKVI LPLLQNMLSD PYFSQPAPKS 240
  241 TGREYFNYGW LERHLRHFPG VDPRDVQATL AELTAVTISE QVLLSGGCER LMVCGGGSRN 300
  301 PLLMARLAAL LPGTEVTTTD AVGISGDDME ALAFAWLAWR TLAGLPGNLP SVTGASQETV 360
  361 LGAIFPANP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	1huxA
Description:	Hydroxyglutaryl-CoA dehydratase component A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits