YRC Public Data Repository - Protein Structure Prediction

Protein:	YDEZ_ECOLI
Organism:	Escherichia coli
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDEZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	265.0	[0..8]	[311..534]
gi\|71733898, gi\|... - gi\|71733898\|ref\|YP_274918.1\| ribose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. p...	221.0	[0..8]	[315..326]
gi\|6714794, gi\|2... - gi\|6714794\|emb\|CAB66286.1\| bifunctional carbohydrate binding and transport protein. [Streptomyces co...	208.0	[0..3]	[313..20]
gi\|254223025, gi... - gi\|75824689\|ref\|ZP_00754136.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... tr\|D7HAT2\|D7HAT2... - Ribose ABC transporter permease OS=Vibrio cholerae RC385 GN=VCRC385_02451 PE=4 SV=1	199.0	[0..12]	[308..35]
gi\|75830918, gi\|... - gi\|75830918\|ref\|ZP_00760188.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229605177, gi... - gi\|229605177\|ref\|YP_002875881.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae ... gi\|229345403, gi... - gi\|229517367\|ref\|ZP_04406812.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae R... gi\|75815453 - gi\|75815453\|ref\|ZP_00745961.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229352947, gi... - gi\|229510502\|ref\|ZP_04399982.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae B... tr\|A0A023PTC2\|A0... - Uncharacterized protein OS=Vibrio cholerae PE=4 SV=1, Ribose ABC transporter permease protein OS=Vib... gi\|75824937, gi\|... - gi\|75824937\|ref\|ZP_00754373.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229357055, gi... - gi\|229506704\|ref\|ZP_04396213.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae B... gi\|227811755, gi... - gi\|227811755\|ref\|YP_002811765.1\| ribose ABC transporter, permease protein [Vibrio cholerae M66-2], g...	196.0	[0..12]	[308..35]
gi\|53987537, gi\|... - gi\|54020364\|ref\|YP_115660.1\| putative ribose ABC transporter [Mycoplasma hyopneumoniae 232], gi\|5398...	196.0	[0..11]	[309..290]
gi\|229526243, gi... - gi\|229526243\|ref\|ZP_04415647.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae b... gi\|229340016, gi... - gi\|229522799\|ref\|ZP_04412213.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae T... gi\|229334251, gi... - gi\|229527889\|ref\|ZP_04417280.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae 1... tr\|A0A023PSC7\|A0... - Uncharacterized protein OS=Vibrio cholerae PE=4 SV=1 gi\|75820338, gi\|... - gi\|75820338\|ref\|ZP_00750388.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste...	195.0	[0..12]	[308..35]
gi\|11279048 - pir\|\|B82497 ribose ABC transporter, permease protein VCA0129 [imported] - Vibrio cholerae (strain N1... gi\|15600900, gi\|... - gi\|9657517\|gb\|AAF96043.1\| ribose ABC transporter, permease protein [Vibrio cholerae O1 biovar eltor ...	195.0	[0..12]	[308..35]
gi\|29831861, gi\|... - gi\|29831861\|ref\|NP_826495.1\| D-ribose ABC transporter permease protein [Streptomyces avermitilis MA-...	194.0	[0..3]	[313..19]
gi\|27366522, gi\|... - gi\|27366522\|ref\|NP_762049.1\| ribose ABC transporter permease protein [Vibrio vulnificus CMCP6], gi\|2...	193.0	[0..12]	[308..30]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRYGWELA LAALLVIEIV AFGAINPRML DLNMLLFSTS DFICIGIVAL PLTMVIVSGG  60
   61 IDISFGSTIG LCAIALGVLF QSGVPMPLAI LLTLLLGALC GLINAGLIIY TKVNPLVITL 120
  121 GTLYLFAGSA LLLSGMAGAT GYEGIGGFPM AFTDFANLDV LGLPVPLIIF LICLLVFWLW 180
  181 LHKTHAGRNV FLIGQSPRVA LYSAI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [206-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNRTLCALY AMTGLASAVA AVLLVSYFGS ARSDLGASFL MPAITAVVLG GANIYGGSGS  60
   61 IIGTAIAVLL VGYLQQGLQM AGVPNQVSSA LSGALLIVVV VGRSVSLHRQ QIKEWLARRA 120
  121 NNPLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits