YRC Public Data Repository - Protein Structure Prediction

Protein:	YDDP_ECOLI
Organism:	Escherichia coli
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDDP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|220931338, gi... - gi\|89211580\|ref\|ZP_01189938.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	433.0	[0..3]	[326..4]
gi\|51857651, gi\|... - gi\|51893962\|ref\|YP_076653.1\| oligopeptide ABC transporter ATP-binding protein [Symbiobacterium therm...	430.0	[0..2]	[327..10]
gi\|10717146 - gi\|10717146\|gb\|AAG22037.1\|AF305387_4 OppD [Bacillus thuringiensis] gi\|42780377, gi\|... - gi\|42780377\|ref\|NP_977624.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC... gi\|228951667, gi... - gi\|228951667\|ref\|ZP_04113769.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228938403, gi... - gi\|228938403\|ref\|ZP_04101013.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228852668, gi... - gi\|228906920\|ref\|ZP_04070787.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228732237, gi... - gi\|229028957\|ref\|ZP_04185056.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH1... gi\|228775377, gi... - gi\|228984358\|ref\|ZP_04144538.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228781810, gi... - gi\|228977893\|ref\|ZP_04138274.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228788432, gi... - gi\|228971282\|ref\|ZP_04131910.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|206744093, gi... - gi\|206977665\|ref\|ZP_03238557.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus H... gi\|229108747, gi... - gi\|229108747\|ref\|ZP_04238355.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|217065388, gi... - gi\|217958763\|ref\|YP_002337311.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|229078481, gi... - gi\|229078481\|ref\|ZP_04211041.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|229068842, gi... - gi\|229068842\|ref\|ZP_04202137.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus F65... gi\|206968151, gi... - gi\|206968151\|ref\|ZP_03229107.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus A... gi\|228726274, gi... - gi\|229043033\|ref\|ZP_04190763.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH6... gi\|228633963, gi... - gi\|229149490\|ref\|ZP_04277725.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m15... gi\|229143896, gi... - gi\|229143896\|ref\|ZP_04272314.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228645630, gi... - gi\|229137973\|ref\|ZP_04266572.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228656984, gi... - gi\|229126595\|ref\|ZP_04255609.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228594086, gi... - gi\|229189375\|ref\|ZP_04316394.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|229177701, gi... - gi\|229177701\|ref\|ZP_04305076.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus 172... gi\|228611564, gi... - gi\|229171930\|ref\|ZP_04299497.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus MM3... gi\|229154852, gi... - gi\|229154852\|ref\|ZP_04282967.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|228588024, gi... - gi\|229195484\|ref\|ZP_04322252.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m12... gi\|218235469, gi... - gi\|218235469\|ref\|YP_002365970.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|221238969, gi... - gi\|222094911\|ref\|YP_002528971.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ...	428.0	[0..3]	[328..2]
gi\|89151429, gi\|... - gi\|89200603\|ref\|ZP_01179355.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	427.0	[0..3]	[328..2]
gi\|30019336, gi\|... - gi\|30019336\|ref\|NP_830967.1\| oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 1...	427.0	[0..3]	[328..2]
gi\|228693111, gi... - gi\|229090229\|ref\|ZP_04221476.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|228662469, gi... - gi\|229120809\|ref\|ZP_04250051.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus 95/... gi\|229183489, gi... - gi\|229183489\|ref\|ZP_04310713.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BGS... gi\|229600621, gi... - gi\|229600621\|ref\|YP_002865713.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthrac... gi\|254682645 - gi\|254682645\|ref\|ZP_05146506.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|254725440 - gi\|254725440\|ref\|ZP_05187222.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|254734063 - gi\|254734063\|ref\|ZP_05191777.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|254740789 - gi\|254740789\|ref\|ZP_05198478.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|254753632 - gi\|254753632\|ref\|ZP_05205668.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|254758729 - gi\|254758729\|ref\|ZP_05210756.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|165873062, gi... - gi\|165873062\|ref\|ZP_02217682.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|218535073, gi... - gi\|218902382\|ref\|YP_002450216.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|196024814, gi... - gi\|196044175\|ref\|ZP_03111411.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus 0... gi\|51977616, gi\|... - gi\|52144147\|ref\|YP_082681.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus E33L... gi\|167641174, gi... - gi\|167641174\|ref\|ZP_02399428.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|118476763, gi... - gi\|118476763\|ref\|YP_893914.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus thuringien... gi\|167528459, gi... - gi\|167636105\|ref\|ZP_02394410.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|49184124, gi\|... - gi\|49184124\|ref\|YP_027376.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis s... gi\|170709064, gi... - gi\|170709064\|ref\|ZP_02899493.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|225787592, gi... - gi\|225863137\|ref\|YP_002748515.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|49328677, gi\|... - gi\|49477121\|ref\|YP_035423.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus thuringiens... gi\|170686656, gi... - gi\|170686656\|ref\|ZP_02877876.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|227003561, gi... - gi\|227815968\|ref\|YP_002815977.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthrac... gi\|30254907, gi\|... - gi\|30261293\|ref\|NP_843670.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis s... gi\|190569166, gi... - gi\|190569166\|ref\|ZP_03022064.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|228845800, gi... - gi\|228913861\|ref\|ZP_04077486.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|47501606, gi\|... - gi\|47526458\|ref\|YP_017807.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthracis s... gi\|172080696, gi... - gi\|177654412\|ref\|ZP_02936309.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus anthraci... gi\|228926325, gi... - gi\|228926325\|ref\|ZP_04089398.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|47554936, gi\|... - gi\|47568388\|ref\|ZP_00239089.1\| peptide ABC transporter, ATP-binding protein [Bacillus cereus G9241],... gi\|196037248, gi... - gi\|196037248\|ref\|ZP_03104559.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus N... gi\|228827079, gi... - gi\|228932561\|ref\|ZP_04095441.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|21399106, gi\|... - gi\|65318561\|ref\|ZP_00391520.1\| COG0444: ABC-type dipeptide/oligopeptide/nickel transport system, ATP... gi\|196036232, gi... - gi\|196036232\|ref\|ZP_03103631.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus W... gi\|228944895, gi... - gi\|228944895\|ref\|ZP_04107257.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien...	427.0	[0..3]	[328..2]
gi\|163861282, gi... - gi\|89204591\|ref\|ZP_01183168.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	426.0	[0..3]	[328..2]
gi\|56419349, gi\|... - gi\|56419349\|ref\|YP_146667.1\| oligopeptide ABC transporter ATP-binding protein [Geobacillus kaustophi...	426.0	[0..3]	[328..2]
gi\|20515602, gi\|... - gi\|20807109\|ref\|NP_622280.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20807109 - gi\|20807109\|ref\|NP_622280.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	425.0	[0..3]	[328..5]
gi\|23100423, gi\|... - gi\|23100423\|ref\|NP_693890.1\| dipeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis...	424.0	[0..3]	[328..2]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPVLDIQQ LHLSFPGFNG DVHALNNVSL QINRGEIVGL VGESGSGKSV TAMLIMRLLP  60
   61 TGSYCVHRGQ ISLLGEDVLN AREKQLRQWR GARVAMIFQE PMTALNPTRR IGLQMMDVIR 120
  121 HHQPISRREA RAKAIDLLEE MQIPDAVEVM SRYPFELSGG MRQRVMIALA FSCEPQLIIA 180
  181 DEPTTALDVT VQLQVLRLLK HKARASGTAV LFISHDMAVV SQLCDSVYVM YAGSVIESGV 240
  241 TADVIHHPRH PYTIGLLQCA PEHGVPRQLL PAIPGTVPNL THLPDGCAFR DRCYAAGAQC 300
  301 ENVPALTACG DNNQRCACWY PQQEVISV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits