YRC Public Data Repository - Protein Structure Prediction

Protein:	YDBC_ECOLI
Organism:	Escherichia coli
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDBC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|50119681, gi\|... - gi\|50119681\|ref\|YP_048848.1\| putative aldo/keto reductase [Pectobacterium atrosepticum SCRI1043], gi...	293.0	[0..1]	[283..1]
gi\|126194344, gi... - gi\|254240966\|ref\|ZP_04934288.1\| hypothetical protein PA2G_01646 [Pseudomonas aeruginosa 2192], gi\|19... gi\|11351605 - pir\|\|H83328 probable oxidoreductase PA2535 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|218771712, gi... - gi\|218891486\|ref\|YP_002440353.1\| putative oxidoreductase [Pseudomonas aeruginosa LESB58], gi\|2187717... gi\|15597731, gi\|... - gi\|9948592\|gb\|AAG05923.1\|AE004681_5 probable oxidoreductase [Pseudomonas aeruginosa PAO1], gi\|155977...	292.0	[0..1]	[283..1]
gi\|23097990, gi\|... - gi\|23097990\|ref\|NP_691456.1\| oxidoreductase [Oceanobacillus iheyensis HTE831], gi\|22776214\|dbj\|BAC12...	292.0	[0..1]	[285..1]
gi\|67861532, gi\|... - gi\|67931231\|ref\|ZP_00524395.1\| Aldo/keto reductase [Solibacter usitatus Ellin6076], gi\|67861532\|gb\|E...	292.0	[0..1]	[285..1]
gi\|116050479, gi... - gi\|32037528\|ref\|ZP_00135800.1\| COG0667: Predicted oxidoreductases (related to aryl-alcohol dehydroge...	291.0	[0..1]	[283..1]
gi\|85775968, gi\|... - gi\|86159457\|ref\|YP_466242.1\| aldo/keto reductase [Anaeromyxobacter dehalogenans 2CP-C], gi\|85775968\|...	291.0	[0..1]	[284..1]
gi\|159894014, gi... - gi\|159900975\|ref\|YP_001547222.1\| aldo/keto reductase [Herpetosiphon aurantiacus ATCC 23779], gi\|1598...	290.0	[0..1]	[283..1]
gi\|56963875, gi\|... - gi\|56963875\|ref\|YP_175606.1\| oxidoreductase [Bacillus clausii KSM-K16], gi\|56910118\|dbj\|BAD64645.1\| ...	290.0	[0..1]	[285..1]
gi\|56378939, gi\|... - gi\|56419097\|ref\|YP_146415.1\| plant-metabolite dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56...	289.0	[0..7]	[284..10]
gi\|7471099 - pir\|\|E75296 aldo/keto reductase - Deinococcus radiodurans (strain R1) gi\|15807252, gi\|... - gi\|6460065\|gb\|AAF11806.1\|AE002058_6 aldo/keto reductase [Deinococcus radiodurans R1], gi\|15807252\|re...	289.0	[0..3]	[282..6]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNTFTLGT KSVNRLGYGA MQLAGPGVFG PPRDRHVAIT VLREALALGV NHIDTSDFYG  60
   61 PHVTNQIIRE ALYPYSDDLT IVTKIGARRG EDASWLPAFS PAELQKAVHD NLRNLGLDVL 120
  121 DVVNLRVMMG DGHGPAEGSI EASLTVLAEM QQQGLVKHIG LSNVTPTQVA EARKIAEIVC 180
  181 VQNEYNIAHR ADDAMIDALA HDGIAYVPFF PLGGFTPLQS STLSDVAASL GATPMQVALA 240
  241 WLLQRSPNIL LIPGTSSVAH LRENMAAEKL HLSEEVLSTL DGISRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	1zuaX
Description:	No description for 1zuaX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits