YRC Public Data Repository - Protein Structure Prediction

Protein:	YCJX_ECOLI
Organism:	Escherichia coli
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCJX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77958053 - gi\|77958053\|ref\|ZP_00822094.1\| COG3106: Predicted ATPase [Yersinia bercovieri ATCC 43970]	810.0	[0..1]	[465..1]
gi\|186895649, gi... - gi\|186895649\|ref\|YP_001872761.1\| protein of unknown function DUF463 YcjX family protein [Yersinia ps... gi\|170024137, gi... - gi\|170024137\|ref\|YP_001720642.1\| protein of unknown function DUF463 YcjX family protein [Yersinia ps... gi\|153947022, gi... - gi\|77629337\|ref\|ZP_00791923.1\| COG3106: Predicted ATPase [Yersinia pseudotuberculosis IP 31758], gi\|...	807.0	[0..1]	[465..1]
gi\|77975340 - gi\|77975340\|ref\|ZP_00830876.1\| COG3106: Predicted ATPase [Yersinia frederiksenii ATCC 33641]	806.0	[0..1]	[465..1]
gi\|108779605, gi... - gi\|108807692\|ref\|YP_651608.1\| hypothetical protein YPA_1697 [Yersinia pestis Antiqua], gi\|108779605\|... gi\|229902278, gi... - gi\|229902278\|ref\|ZP_04517398.1\| conserved protein with nucleoside triphosphate hydrolase domain [Yer... gi\|165926375, gi... - gi\|165926375\|ref\|ZP_02222207.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165990457, gi... - gi\|166010755\|ref\|ZP_02231653.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|25357367 - pir\|\|AE0286 conserved hypothetical protein YPO2348 [imported] - Yersinia pestis (strain CO92) gi\|166208190, gi... - gi\|166211010\|ref\|ZP_02237045.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167400740, gi... - gi\|167400740\|ref\|ZP_02306246.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45436791, gi\|... - gi\|45441928\|ref\|NP_993467.1\| hypothetical protein YP_2135 [Yersinia pestis biovar Microtus str. 9100... gi\|166959010, gi... - gi\|167422198\|ref\|ZP_02313951.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|21958810, gi\|... - gi\|22125876\|ref\|NP_669299.1\| hypothetical protein y1984 [Yersinia pestis KIM], gi\|21958810\|gb\|AAM855... gi\|167056240, gi... - gi\|167425053\|ref\|ZP_02316806.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|218929440, gi... - gi\|218929440\|ref\|YP_002347315.1\| hypothetical protein YPO2348 [Yersinia pestis CO92], gi\|16122572\|re... gi\|167469466 - gi\|167469466\|ref\|ZP_02334170.1\| hypothetical protein YpesF_16619 [Yersinia pestis FV-1] gi\|51596590, gi\|... - gi\|51596590\|ref\|YP_070781.1\| hypothetical protein YPTB2266 [Yersinia pseudotuberculosis IP 32953], g... gi\|229694236, gi... - gi\|229837870\|ref\|ZP_04458029.1\| conserved protein with nucleoside triphosphate hydrolase domain [Yer... gi\|229895029, gi... - gi\|229895029\|ref\|ZP_04510207.1\| conserved protein with nucleoside triphosphate hydrolase domain [Yer... gi\|229688476, gi... - gi\|229898432\|ref\|ZP_04513578.1\| conserved protein with nucleoside triphosphate hydrolase domain [Yer... gi\|149292153, gi... - gi\|149365740\|ref\|ZP_01887775.1\| putative transferase [Yersinia pestis CA88-4125], gi\|149292153\|gb\|ED... Q66A66\|Q66A66_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|77634702, gi\|... - gi\|77634702\|ref\|ZP_00796797.1\| COG3106: Predicted ATPase [Yersinia pestis Angola], gi\|162420107\|ref\|... gi\|89102926, gi\|... - gi\|89102926\|ref\|ZP_01175527.1\| COG3106: Predicted ATPase [Yersinia pestis biovar Orientalis str. IP2...	806.0	[0..1]	[465..1]
gi\|77979529 - gi\|77979529\|ref\|ZP_00834947.1\| COG3106: Predicted ATPase [Yersinia intermedia ATCC 29909]	806.0	[0..1]	[465..1]
gi\|123442379, gi... - gi\|123442379\|ref\|YP_001006358.1\| hypothetical protein YE2118 [Yersinia enterocolitica subsp. enteroc... gi\|10719748 - gi\|10719748\|gb\|AAG22117.1\| hypothetical protein YcjX [Yersinia enterocolitica]	805.0	[0..1]	[465..1]
gi\|254592314, gi... - gi\|254792914\|ref\|YP_003077751.1\| conserved protein with nucleoside triphosphate hydrolase domain [Es... gi\|217317680, gi... - gi\|217329241\|ref\|ZP_03445321.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208810950, gi... - gi\|208810950\|ref\|ZP_03252783.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208731416, gi... - gi\|208814768\|ref\|ZP_03255947.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740248, gi... - gi\|208820125\|ref\|ZP_03260445.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397259, gi... - gi\|209397259\|ref\|YP_002270381.1\| hypothetical protein ECH74115_1966 [Escherichia coli O157:H7 str. E... gi\|209771528, gi... - pir\|\|E85752 probable EC 2.1 enzymes ycjX [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|188999710, gi... - gi\|188999710\|gb\|EDU68696.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189371859, gi... - gi\|189371859\|gb\|EDU90275.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|12515445, gi\|... - gi\|15801849\|ref\|NP_287867.1\| hypothetical protein Z2458 [Escherichia coli O157:H7 EDL933], gi\|125154... gi\|189377912, gi... - gi\|189377912\|gb\|EDU96328.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|13361365, gi\|... - gi\|15831154\|ref\|NP_309927.1\| hypothetical protein ECs1900 [Escherichia coli O157:H7], gi\|13361365\|db... gi\|195937987 - gi\|195937987\|ref\|ZP_03083369.1\| hypothetical protein EscherichcoliO157_16387 [Escherichia coli O157:... gi\|189356805, gi... - gi\|189356805\|gb\|EDU75224.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189367062, gi... - gi\|189367062\|gb\|EDU85478.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168769403, gi... - gi\|189361546\|gb\|EDU79965.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187769258, gi... - gi\|187769258\|gb\|EDU33102.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168749039, gi... - gi\|188016568\|gb\|EDU54690.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|13361365, gi\|... - gi\|15831154\|ref\|NP_309927.1\| hypothetical protein ECs1900 [Escherichia coli O157:H7 str. Sakai], gi\|...	799.0	[0..1]	[465..1]
gi\|26108059, gi\|... - gi\|26247657\|ref\|NP_753697.1\| hypothetical protein c1793 [Escherichia coli CFT073], gi\|26108059\|gb\|AA...	798.0	[0..1]	[465..25]
gi\|74312313, gi\|... - gi\|74312313\|ref\|YP_310732.1\| putative enzyme [Shigella sonnei Ss046], gi\|73855790\|gb\|AAZ88497.1\| put...	796.0	[0..1]	[465..1]
gi\|218431936, gi... - gi\|218704839\|ref\|YP_002412358.1\| conserved hypothetical protein; putative nucleoside triphosphate hy... gi\|218351628, gi... - gi\|218694896\|ref\|YP_002402563.1\| conserved hypothetical protein; putative nucleoside triphosphate hy... gi\|75179031, gi\|... - gi\|75179031\|ref\|ZP_00699049.1\| COG3106: Predicted ATPase [Shigella boydii BS512], gi\|187732603\|ref\|Y... gi\|81245642, gi\|... - gi\|82544231\|ref\|YP_408178.1\| YcjX [Shigella boydii Sb227], gi\|81245642\|gb\|ABB66350.1\| YcjX [Shigella...	796.0	[0..1]	[465..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKNELNA LVNRGVDRHL RLAVTGLSRS GKTAFITAMV NQLLNIHAGA RLPLLSAVRE  60
   61 ERLLGVKRIP QRDFGIPRFT YDEGLAQLYG DPPAWPTPTR GVSEIRLALR FKSNDSLLRH 120
  121 FKDTSTLYLE IVDYPGEWLL DLPMLAQDYL SWSRQMTGLL NGQRGEWSAK WRMMSEGLDP 180
  181 LAPADENRLA DIAAAWTDYL HHCKEQGLHF IQPGRFVLPG DMAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [225-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APALQFFPWP DVDTWGESKL AQADKHTNAG MLRERFNYYC EKVVKGFYKN HFLRFDRQIV  60
   61 LVDCLQPLNS GPQAFNDMRL ALTQLMQSFH Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [316-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQRTLFRRLF SPVIDKLLFA ATKADHVTID QHANMVSLLQ QLIQDAWQNA AFEGISMDCL  60
   61 GLASVQATTS GIIDVNGEKI PALRGNRLSD GAPLTVYPGE VPARLPGQAF WDKQGFQFEA 120
  121 FRPQVMDVDK PLPHIRLDAA LEFLIGDKLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits