YRC Public Data Repository - Protein Structure Prediction

Protein:	YCIU_ECOLI
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCIU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|49176091, gi\|... - gi\|49176091\|ref\|NP_415764.3\| hypothetical protein b1248 [Escherichia coli K12], gb\|AAC74330.1\| orf, ... gi\|7429825 - gi\|7429825\|pir\|\|C64872 hypothetical protein b1248 - Escherichia coli (strain K-12)	178.0	[0..1]	[109..27]
gi\|25305194, gi\|... - gi\|25305194\|pir\|\|D90847 hypothetical protein ECs1748 [imported] - Escherichia coli (strain O157:H7,... gi\|26107979, gi\|... - gi\|26247577\|ref\|NP_753617.1\| hypothetical protein c1712 [Escherichia coli CFT073], gi\|26107979\|gb\|AA... gi\|13361213 - gi\|13361213\|dbj\|BAB35171.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13361213 - gi\|13361213\|dbj\|BAB35171.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|82776595, gi\|... - gi\|82776595\|ref\|YP_402944.1\| hypothetical protein SDY_1306 [Shigella dysenteriae Sd197], gi\|81240743...	178.0	[0..1]	[109..27]
gi\|74312416, gi\|... - gi\|74312416\|ref\|YP_310835.1\| hypothetical protein SSON_1932 [Shigella sonnei Ss046], gi\|73855893\|gb\|...	177.0	[0..1]	[109..27]
gi\|30062769, gi\|... - gi\|30062769\|ref\|NP_836940.1\| hypothetical protein S1335 [Shigella flexneri 2a str. 2457T], gi\|300410...	177.0	[0..1]	[109..27]
gi\|56383415, gi\|... - gi\|56479864\|ref\|NP_707155.2\| hypothetical protein SF1249 [Shigella flexneri 2a str. 301], gi\|5638341...	177.0	[0..1]	[109..27]
gi\|91210471, gi\|... - gi\|91210471\|ref\|YP_540457.1\| dsDNA-mimic protein [Escherichia coli UTI89], gi\|91072045\|gb\|ABE06926.1... gi\|117623463, gi... - gi\|117623463\|ref\|YP_852376.1\| dsDNA-mimic protein [Escherichia coli APEC O1], gi\|115512587\|gb\|ABJ006... gi\|237705212, gi... - gi\|237705212\|ref\|ZP_04535693.1\| dsDNA-mimic protein [Escherichia sp. 3_2_53FAA], gi\|226899969\|gb\|EEH...	176.0	[0..1]	[109..27]
gi\|81245710, gi\|... - gi\|82544299\|ref\|YP_408246.1\| hypothetical protein SBO_1819 [Shigella boydii Sb227], gi\|81245710\|gb\|A...	176.0	[0..1]	[109..27]
gi\|110805250, gi... - gi\|110805250\|ref\|YP_688770.1\| dsDNA-mimic protein [Shigella flexneri 5 str. 8401], gi\|110614798\|gb\|A...	176.0	[0..1]	[109..27]
gi\|22125924, gi\|... - gi\|22125924\|ref\|NP_669347.1\| hypothetical protein y2032 [Yersinia pestis KIM], gi\|21958863\|gb\|AAM855... gi\|45436648, gi\|... - gi\|45441786\|ref\|NP_993325.1\| hypothetical protein YP_1985 [Yersinia pestis biovar Microtus str. 9100...	165.0	[0..3]	[109..18]
gi\|15801474, gi\|... - gi\|15801474\|ref\|NP_287491.1\| hypothetical protein Z2024 [Escherichia coli O157:H7 EDL933], gi\|125149... gi\|25305196 - gi\|25305196\|pir\|\|C85705 hypothetical protein Z2024 [imported] - Escherichia coli (strain O157:H7, s...	164.0	[0..1]	[109..3]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDLNNRLT EDETLEQAYD IFLELAADNL DPADVLLFNL QFEERGGAEL FDPAEDWQEH  60
   61 VDFDLNPDFF AEVVIGLADS EDGEINDVFA RILLCREKDH KLCHIIWRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1nnvA
Description:	The Solution structure of HI1450
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits