YRC Public Data Repository - Protein Structure Prediction

Protein:	YCIN_ECOLI
Organism:	Escherichia coli
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCIN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238785807, gi... - gi\|77956622\|ref\|ZP_00820709.1\| hypothetical protein YberA_01003151 [Yersinia bercovieri ATCC 43970],...	147.0	[0..1]	[83..1]
gi\|238794713, gi... - gi\|77977448\|ref\|ZP_00832896.1\| hypothetical protein YintA_01002743 [Yersinia intermedia ATCC 29909],...	147.0	[0..1]	[83..1]
gi\|238798376, gi... - gi\|77961377\|ref\|ZP_00825216.1\| hypothetical protein YmolA_01002373 [Yersinia mollaretii ATCC 43969],...	146.0	[0..1]	[83..1]
gi\|25510651 - pir\|\|AC0270 conserved hypothetical protein YPO2217 [imported] - Yersinia pestis (strain CO92) gi\|45441814, gi\|... - gi\|45441814\|ref\|NP_993353.1\| hypothetical protein YP_2014 [Yersinia pestis biovar Microtus str. 9100... gi\|22125948, gi\|... - gi\|22125948\|ref\|NP_669371.1\| hypothetical protein y2058 [Yersinia pestis KIM], gi\|21958889\|gb\|AAM856... gi\|115347924, gi... - gi\|218929313\|ref\|YP_002347188.1\| hypothetical protein YPO2217 [Yersinia pestis CO92], gi\|16122445\|re... gi\|51596465, gi\|... - gi\|51596465\|ref\|YP_070656.1\| hypothetical protein YPTB2139 [Yersinia pseudotuberculosis IP 32953], g... gi\|77636196, gi\|... - gi\|77636196\|ref\|ZP_00798272.1\| hypothetical protein YpesA_01000373 [Yersinia pestis Angola], gi\|1624... gi\|165913844, gi... - gi\|89105024\|ref\|ZP_01177552.1\| hypothetical protein Ypesb_01001030 [Yersinia pestis biovar Orientali... gi\|167420435, gi... - gi\|167420435\|ref\|ZP_02312188.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049655, gi... - gi\|167400802\|ref\|ZP_02306308.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|169750804, gi... - gi\|170024270\|ref\|YP_001720775.1\| hypothetical protein YPK_2035 [Yersinia pseudotuberculosis YPIII], ... gi\|149292277, gi... - gi\|149365864\|ref\|ZP_01887899.1\| hypothetical protein YPE_1042 [Yersinia pestis CA88-4125], gi\|149292... gi\|167056175, gi... - gi\|167424988\|ref\|ZP_02316741.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229701997, gi... - gi\|229894902\|ref\|ZP_04510080.1\| hypothetical protein YPS_2680 [Yersinia pestis Pestoides A], gi\|2297... gi\|108779483, gi... - gi\|108807570\|ref\|YP_651486.1\| hypothetical protein YPA_1575 [Yersinia pestis Antiqua], gi\|108779483\|... gi\|145598215, gi... - gi\|145598215\|ref\|YP_001162291.1\| hypothetical protein YPDSF_0918 [Yersinia pestis Pestoides F], gi\|1... gi\|229897645, gi... - gi\|229897645\|ref\|ZP_04512801.1\| hypothetical protein YPH_4679 [Yersinia pestis biovar Orientalis str... gi\|108811846, gi... - gi\|229902149\|ref\|ZP_04517270.1\| hypothetical protein YP516_1875 [Yersinia pestis Nepal516], gi\|22968... gi\|186895514, gi... - gi\|186895514\|ref\|YP_001872626.1\| hypothetical protein YPTS_2208 [Yersinia pseudotuberculosis PB1/+],... gi\|229898290, gi... - gi\|229898290\|ref\|ZP_04513437.1\| hypothetical protein YPF_2719 [Yersinia pestis biovar Orientalis str... Q66AJ1\|Q66AJ1_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|165927358, gi... - gi\|165927358\|ref\|ZP_02223190.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166211112, gi... - gi\|166211112\|ref\|ZP_02237147.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010618, gi... - gi\|166010618\|ref\|ZP_02231516.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ...	146.0	[0..1]	[83..1]
lcl\|NC_016856.1_... - [gene=yciN] [protein=hypothetical protein] [protein_id=YP_005237641.1] [location=1823481..1823732] gi\|238911893 - gi\|238911893\|ref\|ZP_04655730.1\| hypothetical protein SentesTe_12276 [Salmonella enterica subsp. ente... gi\|25512457, gi\|... - gi\|25512457\|pir\|\|AE0654 conserved hypothetical protein STY1335 [imported] - Salmonella enterica subs... gi\|16765059, gi\|... - gi\|16765059\|ref\|NP_460674.1\| hypothetical protein STM1715 [Salmonella typhimurium LT2], gi\|16420245\|... gi\|29137693, gi\|... - gi\|29142064\|ref\|NP_805406.1\| hypothetical protein t1628 [Salmonella enterica subsp. enterica serovar... gi\|62180282, gi\|... - gi\|62180282\|ref\|YP_216699.1\| hypothetical protein SC1712 [Salmonella enterica subsp. enterica serova... gi\|16760165 - gi\|16760165\|ref\|NP_455782.1\| hypothetical protein STY1335 [Salmonella enterica subsp. enterica serov... gi\|194735847, gi... - gi\|194735847\|ref\|YP_002114747.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|197211978, gi... - gi\|197248275\|ref\|YP_002146311.1\| protein YciN [Salmonella enterica subsp. enterica serovar Agona str... gi\|197263856, gi... - gi\|197263856\|ref\|ZP_03163930.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197937518, gi... - gi\|198243002\|ref\|YP_002215426.1\| protein YciN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|205343886, gi... - gi\|205343886\|gb\|EDZ30650.1\| protein YciN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194446404, gi... - gi\|194446404\|ref\|YP_002040969.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport s... gi\|194449605, gi... - gi\|194449605\|ref\|YP_002045762.1\| hypothetical protein SeHA_C1905 [Salmonella enterica subsp. enteric... gi\|194472676, gi... - gi\|194472676\|ref\|ZP_03078660.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168237767, gi... - gi\|197289237\|gb\|EDY28604.1\| protein YciN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|168241293, gi... - gi\|205339113\|gb\|EDZ25877.1\| protein YciN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168260064, gi... - gi\|205350907\|gb\|EDZ37538.1\| protein YciN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168462811, gi... - gi\|195634103\|gb\|EDX52455.1\| protein YciN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161363160, gi... - gi\|161613796\|ref\|YP_001587761.1\| hypothetical protein SPAB_01530 [Salmonella enterica subsp. enteric... gi\|167549777, gi... - gi\|205324978\|gb\|EDZ12817.1\| protein YciN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205328238, gi... - gi\|205328238\|gb\|EDZ15002.1\| protein YciN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205335510, gi... - gi\|205335510\|gb\|EDZ22274.1\| protein YciN [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|224468320, gi... - gi\|224583793\|ref\|YP_002637591.1\| hypothetical protein SPC_2014 [Salmonella enterica subsp. enterica ... gi\|213647993 - gi\|213647993\|ref\|ZP_03378046.1\| hypothetical protein SentesTy_12329 [Salmonella enterica subsp. ente... gi\|213855229 - gi\|213855229\|ref\|ZP_03383469.1\| hypothetical protein SentesT_14617 [Salmonella enterica subsp. enter... gi\|213980310 - gi\|213980310\|ref\|ZP_03407569.1\| hypothetical protein Salmonellaentericaenterica_39945 [Salmonella en... gi\|214002709 - gi\|214002709\|ref\|ZP_03413444.1\| hypothetical protein Salmonellentericaenterica_21254 [Salmonella ent... gi\|213423757 - gi\|213423757\|ref\|ZP_03356737.1\| hypothetical protein Salmonentericaenterica_40503 [Salmonella enteri... gi\|213424432 - gi\|213424432\|ref\|ZP_03357245.1\| hypothetical protein SentesTyphi_01455 [Salmonella enterica subsp. e... gi\|213582176 - gi\|213582176\|ref\|ZP_03364002.1\| hypothetical protein SentesTyph_13629 [Salmonella enterica subsp. en... gi\|213609446 - gi\|213609446\|ref\|ZP_03369272.1\| hypothetical protein SentesTyp_02488 [Salmonella enterica subsp. ent... gi\|200390154, gi... - gi\|200390154\|ref\|ZP_03216765.1\| protein YciN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204322931, gi... - gi\|204927589\|ref\|ZP_03218790.1\| protein YciN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|205352611, gi... - gi\|205352611\|ref\|YP_002226412.1\| hypothetical protein SG1399 [Salmonella enterica subsp. enterica se... gi\|207856772, gi... - gi\|207856772\|ref\|YP_002243423.1\| hypothetical protein SEN1318 [Salmonella enterica subsp. enterica s...	145.0	[0..1]	[83..1]
gi\|77972519, gi\|... - gi\|77972519\|ref\|ZP_00828083.1\| hypothetical protein YfreA_01003716 [Yersinia frederiksenii ATCC 3364...	144.0	[0..1]	[83..1]
gi\|197362283, gi... - gi\|197362283\|ref\|YP_002141920.1\| hypothetical protein SSPA1080 [Salmonella enterica subsp. enterica ... gi\|56413359, gi\|... - gi\|56413359\|ref\|YP_150434.1\| hypothetical protein SPA1161 [Salmonella enterica subsp. enterica serov...	144.0	[0..1]	[83..1]
gi\|153950840, gi... - gi\|77629216\|ref\|ZP_00791802.1\| hypothetical protein YpseI_01000543 [Yersinia pseudotuberculosis IP 3...	144.0	[0..1]	[83..1]
gi\|73855835, gi\|... - gi\|74312358\|ref\|YP_310777.1\| hypothetical protein SSON_1870 [Shigella sonnei Ss046], gi\|73855835\|gb\|...	142.0	[0..1]	[83..1]
gi\|85059385, gi\|... - gi\|85059385\|ref\|YP_455087.1\| hypothetical protein SG1407 [Sodalis glossinidius str. 'morsitans'], gi...	141.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKETQPIDR ETLLKEANKI IREHEDTLAG IEATGVTQRN GVLVFTGDYF LDEQGLPTAK  60
   61 STAVFNMFKH LAHVLSEKYH LVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.840	d.52.9	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits