YRC Public Data Repository - Protein Structure Prediction

Protein:	YCII_ECOLI
Organism:	Escherichia coli
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCII_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|166009250, gi... - gi\|166009250\|ref\|ZP_02230148.1\| YciI domain protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165938226, gi... - gi\|165938226\|ref\|ZP_02226785.1\| YciI domain protein [Yersinia pestis biovar Orientalis str. IP275], ... gi\|167400833, gi... - gi\|167400833\|ref\|ZP_02306339.1\| YciI domain protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166210899, gi... - gi\|166210899\|ref\|ZP_02236934.1\| YciI domain protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|229902121, gi... - gi\|229902121\|ref\|ZP_04517242.1\| predicted enzyme [Yersinia pestis Nepal516], gi\|229681017\|gb\|EEO7711... gi\|165927356, gi... - gi\|165927356\|ref\|ZP_02223188.1\| YciI domain protein [Yersinia pestis biovar Orientalis str. F1991016... gi\|108807546, gi... - gi\|108807546\|ref\|YP_651462.1\| YciI-like protein [Yersinia pestis Antiqua], gi\|108779459\|gb\|ABG13517.... gi\|162418252, gi... - gi\|162418252\|ref\|YP_001606601.1\| YciI-like protein [Yersinia pestis Angola], gi\|162351067\|gb\|ABX8501... gi\|153947201, gi... - gi\|153947201\|ref\|YP_001400922.1\| YciI-like protein [Yersinia pseudotuberculosis IP 31758], gi\|152958... gi\|149292300, gi... - gi\|149365887\|ref\|ZP_01887922.1\| hypothetical protein YPE_1066 [Yersinia pestis CA88-4125], gi\|149292... gi\|145209935, gi... - gi\|145598239\|ref\|YP_001162315.1\| YciI-like protein [Yersinia pestis Pestoides F], gi\|145209935\|gb\|AB... gi\|25355699 - pir\|\|AC0267 conserved hypothetical protein YPO2192 [imported] - Yersinia pestis (strain CO92) gi\|45441792, gi\|... - gi\|45441792\|ref\|NP_993331.1\| YciI-like protein [Yersinia pestis biovar Microtus str. 91001], gi\|4543... gi\|22125928, gi\|... - gi\|22125928\|ref\|NP_669351.1\| YciI-like protein [Yersinia pestis KIM], gi\|21958867\|gb\|AAM85602.1\|AE01... gi\|218929290, gi... - gi\|218929290\|ref\|YP_002347165.1\| YciI-like protein [Yersinia pestis CO92], gi\|16122422\|ref\|NP_405735... Q66AL4\|Q66AL4_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|51596442, gi\|... - gi\|51596442\|ref\|YP_070633.1\| YciI-like protein [Yersinia pseudotuberculosis IP 32953], gi\|51589724\|e... gi\|167056192, gi... - gi\|167425005\|ref\|ZP_02316758.1\| YciI domain protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|229688552, gi... - gi\|229898262\|ref\|ZP_04513409.1\| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195],... gi\|167420053, gi... - gi\|167420053\|ref\|ZP_02311806.1\| YciI domain protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|229894871, gi... - gi\|229894871\|ref\|ZP_04510050.1\| predicted enzyme [Yersinia pestis Pestoides A], gi\|229702164\|gb\|EEO9... gi\|167470450 - gi\|167470450\|ref\|ZP_02335154.1\| YciI domain protein [Yersinia pestis FV-1] gi\|229693954, gi... - gi\|229897617\|ref\|ZP_04512773.1\| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2], gi\|...	144.0	[0..1]	[98..1]
gi\|75853850, gi\|... - gi\|75853850\|ref\|ZP_00761601.1\| COG2350: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	144.0	[0..1]	[98..1]
gi\|85834408, gi\|... - gi\|86147770\|ref\|ZP_01066077.1\| YCII-related domain-like protein [Vibrio sp. MED222], gi\|85834408\|gb\|...	144.0	[0..1]	[98..1]
gi\|91188904, gi\|... - gi\|91226941\|ref\|ZP_01261538.1\| hypothetical protein V12G01_16192 [Vibrio alginolyticus 12G01], gi\|91...	143.0	[0..1]	[98..1]
gi\|27362545, gi\|... - gi\|27366344\|ref\|NP_761872.1\| YciI-like protein [Vibrio vulnificus CMCP6], gi\|27362545\|gb\|AAO11399.1\|... gi\|37198138, gi\|... - gi\|37679395\|ref\|NP_934004.1\| YciI-like protein [Vibrio vulnificus YJ016], gi\|37198138\|dbj\|BAC93975.1...	143.0	[0..1]	[98..1]
gi\|28806964 - gi\|28806964\|dbj\|BAC60235.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28806964, gi\|... - gi\|28898746\|ref\|NP_798351.1\| YciI-like protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28806964\|d...	142.0	[0..1]	[98..1]
gi\|194535753, gi... - gi\|75821970\|ref\|ZP_00751699.1\| COG2350: Uncharacterized protein conserved in bacteria [Vibrio choler... tr\|D7H9I1\|D7H9I1... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_01238 PE=4 SV=1	142.0	[0..1]	[98..1]
gi\|9656220, gi\|1... - gi\|9656220\|gb\|AAF94852.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11354635 - pir\|\|C82167 conserved hypothetical protein VC1702 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|254285356, gi... - gi\|254285356\|ref\|ZP_04960321.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|148873597, gi... - gi\|153830918\|ref\|ZP_01983585.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887359... gi\|121548800, gi... - gi\|121586965\|ref\|ZP_01676744.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215488... gi\|153825469, gi... - gi\|153825469\|ref\|ZP_01978136.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740881... gi\|124115613, gi... - gi\|153213875\|ref\|ZP_01949077.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115613\|... gi\|124119383, gi... - gi\|153221761\|ref\|ZP_01952646.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241193... gi\|125618581, gi... - gi\|75831038\|ref\|ZP_00760306.1\| COG2350: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|153800985, gi... - gi\|153800985\|ref\|ZP_01955571.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123455... gi\|147673552, gi... - gi\|75827055\|ref\|ZP_00756490.1\| COG2350: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|153817150, gi... - gi\|153817150\|ref\|ZP_01969817.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254224851, gi... - gi\|75820141\|ref\|ZP_00750196.1\| COG2350: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|229511573, gi... - gi\|229511573\|ref\|ZP_04401052.1\| hypothetical protein VCE_002982 [Vibrio cholerae B33], gi\|229351538\|... gi\|227009739, gi... - gi\|227081851\|ref\|YP_002810402.1\| hypothetical protein VCM66_1642 [Vibrio cholerae M66-2], gi\|2270097... gi\|229508189, gi... - gi\|229508189\|ref\|ZP_04397694.1\| hypothetical protein VCF_003423 [Vibrio cholerae BX 330286], gi\|2293... gi\|229515093, gi... - gi\|229515093\|ref\|ZP_04404553.1\| hypothetical protein VCB_002748 [Vibrio cholerae TMA 21], gi\|2293477... gi\|229343401, gi... - gi\|229518712\|ref\|ZP_04408155.1\| hypothetical protein VCC_002737 [Vibrio cholerae RC9], gi\|229343401\|... gi\|229523794, gi... - gi\|229523794\|ref\|ZP_04413199.1\| hypothetical protein VCA_001371 [Vibrio cholerae bv. albensis VL426]... gi\|229333043, gi... - gi\|229529269\|ref\|ZP_04418659.1\| hypothetical protein VCG_002362 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229370417, gi... - gi\|229607762\|ref\|YP_002878410.1\| hypothetical protein VCD_002676 [Vibrio cholerae MJ-1236], gi\|22937...	141.0	[0..1]	[98..1]
gi\|77972668 - gi\|77972668\|ref\|ZP_00828228.1\| COG2350: Uncharacterized protein conserved in bacteria [Yersinia fred...	141.0	[0..1]	[98..1]
gi\|110641481, gi... - gi\|110641481\|ref\|YP_669211.1\| YciI-like protein [Escherichia coli 536], gi\|110343073\|gb\|ABG69310.1\| ... gi\|191170916, gi... - gi\|191170916\|ref\|ZP_03032467.1\| YciL domain protein [Escherichia coli F11], gi\|190908648\|gb\|EDV68236...	140.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYVIYAQDK ADSLEKRLSV RPAHLARLQL LHDEGRLLTA GPMPAVDSND PGAAGFTGST  60
   61 VIAEFESLEA AQAWADADPY VAAGVYEHVS VKPFKKVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1mwqA
Description:	Structure of HI0828, a Hypothetical Protein from Haemophilus influenzae with a Putative Active-Site Phosphohistidine
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits