YRC Public Data Repository - Protein Structure Prediction

Protein:	YCIF_ECOLI
Organism:	Escherichia coli
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|69151805, gi\|... - gi\|69936782\|ref\|ZP_00631537.1\| Protein of unknown function DUF892 [Paracoccus denitrificans PD1222],...	210.0	[0..1]	[166..96]
gi\|192292831, gi... - gi\|192292831\|ref\|YP_001993436.1\| protein of unknown function DUF892 [Rhodopseudomonas palustris TIE-... RPA3943 - RPA3943 conserved hypothetical protein 4452700:4453206 reverse MW:18680	208.0	[0..2]	[163..7]
gi\|13473870, gi\|... - gi\|14024621\|dbj\|BAB51224.1\| mll4608 [Mesorhizobium loti MAFF303099], gi\|13473870\|ref\|NP_105438.1\| yc...	202.0	[0..2]	[164..7]
gi\|86573968, gi\|... - gi\|86750940\|ref\|YP_487436.1\| hypothetical protein RPB_3832 [Rhodopseudomonas palustris HaA2], gi\|865...	199.0	[0..2]	[163..7]
gi\|90104995, gi\|... - gi\|90422981\|ref\|YP_531351.1\| hypothetical protein RPC_1470 [Rhodopseudomonas palustris BisB18], gi\|9...	199.0	[0..2]	[163..7]
gi\|110590459, gi... - gi\|110590460\|pdb\|2GYQ\|B Chain B, Ycfi, A Putative Structural Protein From Rhodopseudomonas Palustris...	197.0	[0..2]	[166..9]
gi\|115523839, gi... - gi\|77740562\|ref\|ZP_00809049.1\| Protein of unknown function DUF892 [Rhodopseudomonas palustris BisA53...	197.0	[0..4]	[164..6]
gi\|78512990, gi\|... - gi\|78699090\|ref\|ZP_00863588.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851299...	194.0	[0..2]	[164..7]
gi\|89361713, gi\|... - gi\|89361713\|ref\|ZP_01199526.1\| conserved hypothetical protein [Xanthobacter autotrophicus Py2], gi\|8...	194.0	[0..2]	[163..7]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE THGQIERIDQ  60
   61 VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA ALIAAAQKVE HYEIASYGTL 120
  121 ATLAEQLGYR KAAKLLKETL EEEKATDIKL TDLAINNVNK KAENKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2gs4A
Description:	No description for 2gs4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits