YRC Public Data Repository - Protein Structure Prediction

Protein:	YCIE_ECOLI
Organism:	Escherichia coli
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCIE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|193062701, gi... - gi\|75259369\|ref\|ZP_00730688.1\| COG3685: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194426023, gi... - gi\|75212696\|ref\|ZP_00712694.1\| COG3685: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|195182846 - gi\|195182846\|dbj\|BAG66418.1\| conserved predicted protein [Escherichia coli O111:H-] gi\|775201, gi\|924837 - gi\|924837\|gb\|AAA73854.1\| yciE gene product, gi\|775201\|gb\|AAA65179.1\| unknown	206.0	[0..1]	[168..1]
gi\|190903300, gi... - gi\|75230185\|ref\|ZP_00716686.1\| COG3685: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209918497, gi... - gi\|209918497\|ref\|YP_002292581.1\| hypothetical protein ECSE_1306 [Escherichia coli SE11], gi\|20991175... gi\|218694828, gi... - gi\|218694828\|ref\|YP_002402495.1\| hypothetical protein EC55989_1415 [Escherichia coli 55989], gi\|2183... gi\|775157, gi\|924823 - gi\|924823\|gb\|AAA73842.1\| yciE gene product, gi\|775157\|gb\|AAA65161.1\| unknown	206.0	[0..1]	[168..1]
gi\|208731443, gi... - gi\|208814795\|ref\|ZP_03255974.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208724559, gi... - gi\|208811053\|ref\|ZP_03252886.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939191 - gi\|195939191\|ref\|ZP_03084573.1\| hypothetical protein EscherichcoliO157_22691 [Escherichia coli O157:... gi\|168801604, gi... - gi\|189376255\|gb\|EDU94671.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|217317739, gi... - gi\|217329300\|ref\|ZP_03445380.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209161815, gi... - gi\|209400415\|ref\|YP_002270311.1\| hypothetical protein ECH74115_1888 [Escherichia coli O157:H7 str. E... gi\|208740209, gi... - gi\|208820086\|ref\|ZP_03260406.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|189366288, gi... - gi\|189366288\|gb\|EDU84704.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354814, gi... - gi\|189354814\|gb\|EDU73233.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168751145, gi... - gi\|188014747\|gb\|EDU52869.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|15831083, gi\|... - gi\|15831083\|ref\|NP_309856.1\| hypothetical protein ECs1829 [Escherichia coli O157:H7], gi\|13361294\|db... gi\|189370431, gi... - gi\|189370431\|gb\|EDU88847.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|25383046, gi\|... - gi\|924816\|gb\|AAA73836.1\| yciE gene product, gi\|775164\|gb\|AAA65167.1\| unknown, pir\|\|E90857 yciE prote... gi\|188998940, gi... - gi\|188998940\|gb\|EDU67926.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187769272, gi... - gi\|187769272\|gb\|EDU33116.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|12515544, gi\|... - gi\|15801921\|ref\|NP_287942.1\| hypothetical protein Z2555 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|189359939, gi... - gi\|189359939\|gb\|EDU78358.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|254592246, gi... - gi\|254792846\|ref\|YP_003077683.1\| hypothetical protein ECSP_1776 [Escherichia coli O157:H7 str. TW143... gi\|15831083, gi\|... - gi\|15831083\|ref\|NP_309856.1\| hypothetical protein ECs1829 [Escherichia coli O157:H7 str. Sakai], gi\|...	205.0	[0..1]	[168..1]
gi\|24051568, gi\|... - gi\|24112656\|ref\|NP_707166.1\| hypothetical protein SF1260 [Shigella flexneri 2a str. 301], gi\|2405156... gi\|30062780, gi\|... - gi\|30062780\|ref\|NP_836951.1\| hypothetical protein S1346 [Shigella flexneri 2a str. 2457T], gi\|300410... gi\|110805261, gi... - gi\|110805261\|ref\|YP_688781.1\| hypothetical protein SFV_1271 [Shigella flexneri 5 str. 8401], gi\|1106...	205.0	[0..1]	[168..1]
gi\|775184 - gi\|775184\|gb\|AAB60049.1\| unknown	205.0	[0..1]	[168..1]
gi\|924844, gi\|92... - gi\|924844\|gb\|AAA73860.1\| yciE gene product, gi\|924830\|gb\|AAA73848.1\| yciE gene product, gi\|924809\|gb... gi\|193069995, gi... - gi\|75235235\|ref\|ZP_00719472.1\| COG3685: Uncharacterized protein conserved in bacteria [Escherichia c...	204.0	[0..1]	[168..1]
gi\|226900038, gi... - gi\|237705281\|ref\|ZP_04535762.1\| YciE [Escherichia sp. 3_2_53FAA], gi\|226900038\|gb\|EEH86297.1\| YciE [... gi\|91210549, gi\|... - gi\|91210549\|ref\|YP_540535.1\| hypothetical protein UTI89_C1526 [Escherichia coli UTI89], gi\|91072123\|... gi\|117623519, gi... - gi\|117623519\|ref\|YP_852432.1\| hypothetical protein APECO1_419 [Escherichia coli APEC O1], gi\|1155126... gi\|218558242, gi... - gi\|218558242\|ref\|YP_002391155.1\| hypothetical protein ECS88_1392 [Escherichia coli S88], gi\|21836501...	204.0	[0..1]	[168..1]
gi\|227886313, gi... - gi\|227886313\|ref\|ZP_04004118.1\| protein YciE [Escherichia coli 83972], gi\|227836517\|gb\|EEJ46983.1\| p... gi\|26247588, gi\|... - gi\|26247588\|ref\|NP_753628.1\| hypothetical protein c1723 [Escherichia coli CFT073], gi\|26107990\|gb\|AA... gi\|775194, gi\|11... - gi\|775194\|gb\|AAB60057.1\| unknown, gi\|775189\|gb\|AAB60053.1\| unknown, gi\|1185412\|gb\|AAA87803.1\| yciE g...	204.0	[0..1]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIEHYHDW LRDAHAMEKQ AESMLESMAS RIDNYPELRA RIEQHLSETK NQIVQLETIL  60
   61 DRNDISRSVI KDSMSKMAAL GQSIGGIFPS DEIVKGSISG YVFEQFEIAC YTSLLAAAKN 120
  121 AGDTASIPTI EAILNEEKQM ADWLIQNIPQ TTEKFLIRSE TDGVEAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	2gyqA
Description:	No description for 2gyqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits