YRC Public Data Repository - Protein Structure Prediction

Protein:	YCHN_ECOLI
Organism:	Escherichia coli
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCHN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218431840, gi... - gi\|218704743\|ref\|YP_002412262.1\| hypothetical protein ECUMN_1518 [Escherichia coli UMN026], gi\|21843... gi\|110343042, gi... - gi\|110641450\|ref\|YP_669180.1\| putative ACR involved in intracellular sulfur reduction [Escherichia c... gi\|226899940, gi... - gi\|237705183\|ref\|ZP_04535664.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227836561, gi... - gi\|227886357\|ref\|ZP_04004162.1\| dsrE family protein [Escherichia coli 83972], gi\|227836561\|gb\|EEJ470... gi\|26107946, gi\|... - gi\|26247544\|ref\|NP_753584.1\| hypothetical protein c1679 [Escherichia coli CFT073], gi\|26107946\|gb\|AA... gi\|190908776, gi... - gi\|75242023\|ref\|ZP_00725817.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|91072016, gi\|... - gi\|91210442\|ref\|YP_540428.1\| hypothetical protein UTI89_C1415 [Escherichia coli UTI89], gi\|91072016\|...	130.0	[0..1]	[117..1]
gi\|75257127, gi\|... - gi\|75257127\|ref\|ZP_00728663.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|194425837, gi... - gi\|75212656\|ref\|ZP_00712654.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	129.0	[0..1]	[117..1]
Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 10... Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri GN=MK0008 PE=4 SV=1	129.0	[0..4]	[117..10]
gi\|218364918, gi... - gi\|218558149\|ref\|YP_002391062.1\| hypothetical protein ECS88_1288 [Escherichia coli S88], gi\|21836491... gi\|115512561, gi... - gi\|117623437\|ref\|YP_852350.1\| hypothetical protein APECO1_336 [Escherichia coli APEC O1], gi\|1155125...	129.0	[0..1]	[117..1]
gi\|192956729, gi... - gi\|75235269\|ref\|ZP_00719506.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	127.0	[0..1]	[117..1]
gi\|197243211, gi... - gi\|197264956\|ref\|ZP_03165030.1\| protein YchN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197093711, gi... - gi\|197362234\|ref\|YP_002141871.1\| hypothetical protein SSPA1030 [Salmonella enterica subsp. enterica ... gi\|197936702, gi... - gi\|198242186\|ref\|YP_002215376.1\| protein YchN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|199603504, gi... - gi\|200391059\|ref\|ZP_03217670.1\| protein YchN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205342588, gi... - gi\|205342588\|gb\|EDZ29352.1\| protein YchN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194449985, gi... - gi\|194449985\|ref\|YP_002045812.1\| protein YchN [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194735851, gi... - gi\|194735851\|ref\|YP_002114799.1\| protein YchN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|197212941, gi... - gi\|197249238\|ref\|YP_002146260.1\| protein YchN [Salmonella enterica subsp. enterica serovar Agona str... gi\|167993212, gi... - gi\|205328659\|gb\|EDZ15423.1\| protein YchN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168237823, gi... - gi\|197289273\|gb\|EDY28640.1\| protein YchN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|205339216, gi... - gi\|205339216\|gb\|EDZ25980.1\| protein YchN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168260006, gi... - gi\|205350825\|gb\|EDZ37456.1\| protein YchN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... lcl\|NC_016856.1_... - [gene=ychN] [protein=putative sulfur reduction protein] [protein_id=YP_005237698.1] [location=187901... gi\|56127566, gi\|... - gi\|56413309\|ref\|YP_150384.1\| hypothetical protein SPA1104 [Salmonella enterica subsp. enterica serov... gi\|161613736, gi... - gi\|161613736\|ref\|YP_001587701.1\| hypothetical protein SPAB_01461 [Salmonella enterica subsp. enteric... gi\|205321745, gi... - gi\|205321745\|gb\|EDZ09584.1\| protein YchN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|213979802 - gi\|213979802\|ref\|ZP_03407061.1\| hypothetical protein Salmonellaentericaenterica_37048 [Salmonella en... gi\|214000430 - gi\|214000430\|ref\|ZP_03411165.1\| hypothetical protein Salmonellentericaenterica_07266 [Salmonella ent... gi\|213420507 - gi\|213420507\|ref\|ZP_03353573.1\| hypothetical protein Salmonentericaenterica_23290 [Salmonella enteri... gi\|213428329 - gi\|213428329\|ref\|ZP_03361079.1\| hypothetical protein SentesTyphi_23904 [Salmonella enterica subsp. e... gi\|213612427 - gi\|213612427\|ref\|ZP_03370253.1\| hypothetical protein SentesTyp_07929 [Salmonella enterica subsp. ent... gi\|213852602 - gi\|213852602\|ref\|ZP_03382134.1\| hypothetical protein SentesT_06834 [Salmonella enterica subsp. enter... gi\|204322988, gi... - gi\|204927646\|ref\|ZP_03218847.1\| protein YchN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|206708527, gi... - gi\|207856724\|ref\|YP_002243375.1\| hypothetical protein SEN1270 [Salmonella enterica subsp. enterica s... gi\|213029407 - gi\|213029407\|ref\|ZP_03343854.1\| hypothetical protein Salmonelentericaenterica_47452 [Salmonella ente... gi\|213163604 - gi\|213163604\|ref\|ZP_03349314.1\| hypothetical protein Salmoneentericaenterica_27755 [Salmonella enter... gi\|16502411, gi\|... - gi\|25303331\|pir\|\|AC0648 conserved hypothetical protein STY1283 [imported] - Salmonella enterica subs... gi\|16760117 - gi\|16760117\|ref\|NP_455734.1\| hypothetical protein STY1283 [Salmonella enterica subsp. enterica serov... gi\|16765110, gi\|... - gi\|16765110\|ref\|NP_460725.1\| putative sulfur reduction protein [Salmonella typhimurium LT2], gi\|1642... gi\|29142112, gi\|... - gi\|29142112\|ref\|NP_805454.1\| hypothetical protein t1678 [Salmonella enterica subsp. enterica serovar...	127.0	[0..1]	[117..1]
gi\|78700533, gi\|... - gi\|78700533\|ref\|ZP_00864989.1\| DsrE protein [Alkalilimnicola ehrlichei MLHE-1], gi\|78522020\|gb\|EAP35...	127.0	[0..3]	[117..2]
gi\|88928617, gi\|... - gi\|88948727\|ref\|ZP_01151490.1\| DsrE protein [Halorhodospira halophila SL1], gi\|88928617\|gb\|EAR47578....	126.0	[0..1]	[117..1]
gi\|224583741, gi... - gi\|224583741\|ref\|YP_002637539.1\| hypothetical protein SPC_1962 [Salmonella enterica subsp. enterica ... gi\|194444372, gi... - gi\|194444372\|ref\|YP_002041019.1\| protein YchN [Salmonella enterica subsp. enterica serovar Newport s... gi\|168462755, gi... - gi\|195633951\|gb\|EDX52303.1\| protein YchN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|62127966, gi\|... - gi\|62180333\|ref\|YP_216750.1\| hypothetical protein SC1763 [Salmonella enterica subsp. enterica serova...	125.0	[0..1]	[117..1]
gi\|74057996, gi\|... - gi\|74318501\|ref\|YP_316241.1\| DsrE protein [Thiobacillus denitrificans ATCC 25259], gi\|74057996\|gb\|AA...	124.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKIVIVANG APYGSESLFN SLRLAIALRE QESNLDLRLF LMSDAVTAGL RGQKPGEGYN  60
   61 IQQMLEILTA QNVPVKLCKT CTDGRGISTL PLIDGVEIGT LVELAQWTLS ADKVLTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1jx7A
Description:	Hypothetical protein YchN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits