YRC Public Data Repository - Protein Structure Prediction

Protein:	DHAM_ECOLI, YCGC...
Organism:	Escherichia coli
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHAM_ECOLI, YCGC....

Description	E-value	Query Range	Subject Range
gi\|237705160, gi... - gi\|237705160\|ref\|ZP_04535641.1\| dihydroxyacetone kinase subunit M [Escherichia sp. 3_2_53FAA], gi\|22... gi\|117623417, gi... - gi\|117623417\|ref\|YP_852330.1\| dihydroxyacetone kinase subunit M [Escherichia coli APEC O1], gi\|11551...	354.0	[0..1]	[473..1]
gi\|91210418, gi\|... - gi\|91210418\|ref\|YP_540404.1\| dihydroxyacetone kinase subunit M [Escherichia coli UTI89], gi\|91071992...	351.0	[0..2]	[473..3]
gi\|25498580, gi\|... - pir\|\|E85699 probable PTS system enzyme I ycgC [imported] - Escherichia coli (strain O157:H7, substra... gi\|12514909, gi\|... - gi\|15801428\|ref\|NP_287445.1\| dihydroxyacetone kinase subunit M [Escherichia coli O157:H7 EDL933], gi... gi\|15830957, gi\|... - gi\|15830957\|ref\|NP_309730.1\| putative PTS system enzyme I [Escherichia coli O157:H7], gi\|13361168\|db... gi\|15830957, gi\|... - gi\|15830957\|ref\|NP_309730.1\| dihydroxyacetone kinase subunit M [Escherichia coli O157:H7 str. Sakai]...	349.0	[0..1]	[473..1]
gi\|190908688, gi... - gi\|75242003\|ref\|ZP_00725797.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|110343020, gi... - gi\|110641428\|ref\|YP_669158.1\| dihydroxyacetone kinase subunit M [Escherichia coli 536], gi\|110343020...	348.0	[0..2]	[473..1]
gi\|26247521, gi\|... - gi\|26247521\|ref\|NP_753561.1\| dihydroxyacetone kinase subunit M [Escherichia coli CFT073], gi\|2610792...	348.0	[0..2]	[473..3]
gi\|82544350, gi\|... - gi\|82544350\|ref\|YP_408297.1\| dihydroxyacetone kinase subunit M [Shigella boydii Sb227], gi\|81245761\|...	348.0	[0..1]	[473..1]
gi\|75511766, gi\|... - gi\|75511766\|ref\|ZP_00734395.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|157160702, gi... - gi\|75195351\|ref\|ZP_00705421.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ...	347.0	[0..2]	[473..1]
gi\|218351444, gi... - gi\|218694712\|ref\|YP_002402379.1\| dihydroxyacetone kinase subunit M [Escherichia coli 55989], gi\|2183... gi\|191168538, gi... - gi\|75228268\|ref\|ZP_00714923.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ...	347.0	[0..2]	[473..1]
gi\|89108043, gi\|... - gi\|89108043\|ref\|AP_001823.1\| fused predicted dihydroxyacetone-specific PTS enzyme HPr component and ... EG12399 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components / Multidomain dihydroxyacetone-sp... gi\|194424035, gi... - gi\|83587342\|ref\|ZP_00925970.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|124528419, gi... - gi\|124528419\|ref\|ZP_01699729.1\| dihydroxyacetone kinase, phosphotransfer subunit [Escherichia coli B... gi\|170080826, gi... - gi\|170080826\|ref\|YP_001730146.1\| fused dihydroxyacetone-specific PTS enzymes: HPr component; EI comp... gi\|169755363, gi... - gi\|170020435\|ref\|YP_001725389.1\| dihydroxyacetone kinase subunit M [Escherichia coli ATCC 8739], gi\|... gi\|251784705, gi... - gi\|251784705\|ref\|YP_002999009.1\| hypothetical protein B21_01183 [Escherichia coli BL21], gi\|24237697... EG12399 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components / Multidomain dihydroxyacetone-sp... gi\|254161280, gi... - gi\|254161280\|ref\|YP_003044388.1\| fused predicted dihydroxyacetone-specific PTS enzymes: HPr componen... gi\|253773804, gi... - gi\|254288088\|ref\|YP_003053836.1\| fused predicted dihydroxyacetone-specific PTS enzymes: HPr componen... sp\|P37349\|DHAM_ECOLI - PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM OS=Escherichia coli (strain K...	347.0	[0..2]	[473..1]
gi\|192925821, gi... - gi\|75255355\|ref\|ZP_00727175.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|192955517, gi... - gi\|75233905\|ref\|ZP_00718365.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|194415931, gi... - gi\|75212636\|ref\|ZP_00712634.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|157157322, gi... - gi\|75190252\|ref\|ZP_00703519.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ... gi\|209918438, gi... - gi\|209918438\|ref\|YP_002292522.1\| dihydroxyacetone kinase subunit M [Escherichia coli SE11], gi\|20991... gi\|218553753, gi... - gi\|218553753\|ref\|YP_002386666.1\| dihydroxyacetone kinase subunit M [Escherichia coli IAI1], gi\|21836...	346.0	[0..2]	[473..1]

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Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVNLVIVSH SSRLGEGVGE LARQMLMSDS CKIAIAAGID DPQNPIGTDA VKVMEAIESV  60
   61 ADADHVLVMM DMGSALLSAE TALELLAPEI AAKVRLCAAP LVEGTLAATV SAASGADIDK 120
  121 VIFDAMHALE AKREQLGLPS SDTEISDTCP AYDEEARSLA VVIKNRNGLH VRPASRLVYT 180
  181 LSTFNADMLL EKNGKCVTPE SINQIALLQV RYNDTLRLIA KGPEAEEALI AFRQLAEDNF 240
  241 GETEEVAPPT LRPVPPVSGK AFYYQPVLCT VQAKSTLTVE EEQDRLRQAI DFTLLDLMTL 300
  301 TAKAEASGLD DIAAIFSGHH TLLDDPELLA AASELLQHEH CTAEYAWQQV LKELSQQYQQ 360
  361 LDDEYLQARY IDVDDLLHRT LVHLTQTKEE LPQFNSPTIL LAENIYPSTV LQLDPAVVKG 420
  421 ICLSAGSPVS HSALIARELG IGWICQQGEK LYAIQPEETL TLDVKTQRFN RQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	2olsA
Description:	No description for 2olsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits