YRC Public Data Repository - Protein Structure Prediction

Protein:	YCFZ_ECOLI
Organism:	Escherichia coli
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCFZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115512430, gi... - gi\|117623306\|ref\|YP_852219.1\| hypothetical protein APECO1_202 [Escherichia coli APEC O1], gi\|1155124... gi\|218364771, gi... - gi\|218558002\|ref\|YP_002390915.1\| conserved hypothetical protein; putative inner membrane protein [Es...	471.0	[0..1]	[262..35]
gi\|227886522, gi... - gi\|227886522\|ref\|ZP_04004327.1\| possible inner membrane protein [Escherichia coli 83972], gi\|2278367... gi\|26247265, gi\|... - gi\|26247265\|ref\|NP_753305.1\| hypothetical protein c1396 [Escherichia coli CFT073], gi\|26107666\|gb\|AA...	467.0	[0..1]	[262..1]
gi\|237706893, gi... - gi\|237706893\|ref\|ZP_04537374.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91210276, gi\|... - gi\|91210276\|ref\|YP_540262.1\| hypothetical protein UTI89_C1249 [Escherichia coli UTI89], gi\|91071850\|...	465.0	[0..1]	[262..1]
gi\|190906641, gi... - gi\|191173096\|ref\|ZP_03034629.1\| putative membrane protein [Escherichia coli F11], gi\|190906641\|gb\|ED... gi\|110641297, gi... - gi\|110641297\|ref\|YP_669027.1\| hypothetical protein ECP_1115 [Escherichia coli 536], gi\|110342889\|gb\|...	454.0	[0..1]	[262..1]
gi\|75511390 - gi\|75511390\|ref\|ZP_00734073.1\| hypothetical protein Ecol5_01004291 [Escherichia coli 53638]	445.0	[0..27]	[262..1]
gi\|83584888 - gi\|83584888\|ref\|ZP_00923546.1\| hypothetical protein Ecol1_01003912 [Escherichia coli 101-1]	443.0	[0..27]	[262..1]
gi\|75239619 - gi\|75239619\|ref\|ZP_00723586.1\| COG1512: Beta-propeller domains of methanol dehydrogenase type [Esche...	438.0	[0..27]	[262..1]
gi\|75255636 - gi\|75255636\|ref\|ZP_00727415.1\| hypothetical protein EcolE2_01004344 [Escherichia coli E22] gi\|75228208 - gi\|75228208\|ref\|ZP_00714867.1\| hypothetical protein EcolB7_01003450 [Escherichia coli B7A] gi\|75208952 - gi\|75208952\|ref\|ZP_00709222.1\| hypothetical protein EcolB_01003832 [Escherichia coli B171] gi\|75190178 - gi\|75190178\|ref\|ZP_00703445.1\| hypothetical protein EcolE_01003472 [Escherichia coli E24377A]	436.0	[0..27]	[262..1]
gi\|75234230 - gi\|75234230\|ref\|ZP_00718623.1\| hypothetical protein EcolE1_01003870 [Escherichia coli E110019]	433.0	[0..27]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFIILLSL LILLPLTAAS KPLIPIMKTL FTDVTGTVPD AEEIAHKAEL FRQQTGIAPF  60
   61 IVVLPDINNE ASLRQNGKAM LAHASSSLSD VKGSVLLLFT TREPRLIMIT NGQVESGLDD 120
  121 KHLGLLIENH TLAYLNADLW YQGINNALAV LQAQILKQST PPLTYYPHPG QQHENAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGSTNTLGFI AWAATFILFS RIFYYTTRFI YALKFAVAMT IANMGYQALC LYIDNSFAIT  60
   61 RISPLWAGLI GVCTFIAALL LTSKR